Transcript: ENST00000652333.1 PCAT19-228

Description

prostate cancer associated transcript 19 [Source:HGNC Symbol;Acc:HGNC:49593]

Gene Synonyms

LINC01190, LOC100505495

Location

Chromosome 19: 41,449,520-41,500,644 reverse strand.

About this transcript

This transcript has 4 exons, is associated with 22904 variant alleles and maps to 125 oligo probes.

Gene

This transcript is a product of gene ENSG00000267107.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000652333.1	PCAT19-228	548	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000588495.6	PCAT19-201	3477	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000650804.3	PCAT19-210	2745	No protein	-	lncRNA	-	-
ENST00000652144.3	PCAT19-225	2589	No protein	-	lncRNA	-	-
ENST00000651979.1	PCAT19-222	2174	No protein	-	lncRNA	-	-
ENST00000651572.4	PCAT19-217	2140	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000594315.4	PCAT19-202	1844	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000652558.1	PCAT19-232	1649	No protein	-	lncRNA	-	-
ENST00000650991.1	PCAT19-211	1576	No protein	-	lncRNA	-	-
ENST00000651789.1	PCAT19-220	1471	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000651712.1	PCAT19-219	1468	No protein	-	lncRNA	-	-
ENST00000597702.3	PCAT19-205	1418	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000652127.1	PCAT19-224	1365	No protein	-	lncRNA	-	-
ENST00000652484.3	PCAT19-230	1362	No protein	-	lncRNA	-	-
ENST00000652160.1	PCAT19-226	1356	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000668141.1	PCAT19-235	1353	No protein	-	lncRNA	-	-
ENST00000652511.1	PCAT19-231	1348	No protein	-	lncRNA	-	-
ENST00000651285.2	PCAT19-214	1245	No protein	-	lncRNA	-	-
ENST00000651651.1	PCAT19-218	1239	No protein	-	lncRNA	-	-
ENST00000595837.1	PCAT19-204	1232	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000595063.2	PCAT19-203	1192	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000650748.1	PCAT19-208	1148	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000664904.1	PCAT19-234	1091	No protein	-	lncRNA	-	-
ENST00000656967.1	PCAT19-233	1077	No protein	-	lncRNA	-	-
ENST00000650788.1	PCAT19-209	1039	No protein	-	lncRNA	-	-
ENST00000652406.2	PCAT19-229	983	No protein	-	lncRNA	-	-
ENST00000598215.3	PCAT19-206	957	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000651156.3	PCAT19-213	956	No protein	-	lncRNA	-	-
ENST00000651016.2	PCAT19-212	948	No protein	-	lncRNA	-	-
ENST00000651806.2	PCAT19-221	887	No protein	-	lncRNA	-	-
ENST00000652279.1	PCAT19-227	797	No protein	-	lncRNA	-	-
ENST00000651291.1	PCAT19-215	773	No protein	-	lncRNA	-	-
ENST00000599801.6	PCAT19-207	768	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000652015.1	PCAT19-223	761	No protein	-	lncRNA	-	-
ENST00000783813.1	PCAT19-236	721	No protein	-	lncRNA	-	-
ENST00000783819.1	PCAT19-242	625	No protein	-	lncRNA	-	-
ENST00000783820.1	PCAT19-243	518	No protein	-	lncRNA	-	-
ENST00000783814.1	PCAT19-237	502	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000783817.1	PCAT19-240	502	No protein	-	lncRNA	-	-
ENST00000783816.1	PCAT19-239	453	No protein	-	lncRNA	-	-
ENST00000783818.1	PCAT19-241	402	No protein	-	lncRNA	-	-
ENST00000783815.1	PCAT19-238	343	No protein	-	lncRNA	-	-
ENST00000651464.1	PCAT19-216	270	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 548 bps,

Version

ENST00000652333.1

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENST00000652333.1 PCAT19-228

Summary

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Transcript: ENST00000652333.1 PCAT19-228

Summary

About Us

Get help

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