Transcript: ENST00000652209.1 LRATD2-203

Description

LRAT domain containing 2 [Source:HGNC Symbol;Acc:HGNC:24166]

Gene Synonyms

BCMP101, FAM84B, NSE2

Location

Chromosome 8: 126,552,901-126,557,731 reverse strand.

About this transcript

This transcript has 1 exon, is annotated with 10 domains and features, is associated with 2472 variant alleles and maps to 374 oligo probes.

Gene

This transcript is a product of gene ENSG00000168672.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000304916.4	LRATD2-201	5488	310aa	ENSP00000302578.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6358	Q96KN1	NM_174911.5	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000652209.1	LRATD2-203	4831	310aa	ENSP00000498944.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6358	Q96KN1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENST00000517458.1	LRATD2-202	844	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Summary

Statistics

Exons: 1, Coding exons: 1, Transcript length: 4,831 bps, Translation length: 310 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96KN1

CCDS

This transcript is a member of the Human CCDS set: CCDS6358

Version

ENST00000652209.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Annotation Attributes

RNA-Seq supported only [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000652209.1 LRATD2-203

Summary

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Transcript: ENST00000652209.1 LRATD2-203

Summary

About Us

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