Transcript: ENST00000649880.2 SCAT1-219

Description

S-phase cancer associated transcript 1 [Source:HGNC Symbol;Acc:HGNC:52930]

Gene Synonyms

CTD-2357A8.3, LINC02081, XLOC_012582

Location

Chromosome 17: 78,617,388-78,630,512 reverse strand.

About this transcript

This transcript has 4 exons and maps to 138 oligo probes.

Gene

This transcript is a product of gene ENSG00000267123.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000648396.1	SCAT1-210	732	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000586185.2	SCAT1-201	2246	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000648757.1	SCAT1-213	2016	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000650214.1	SCAT1-220	1664	No protein	-	lncRNA	-	-
ENST00000649418.1	SCAT1-215	1540	No protein	-	lncRNA	-	-
ENST00000647957.1	SCAT1-207	1154	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000649477.2	SCAT1-216	1147	No protein	-	lncRNA	-	-
ENST00000648052.2	SCAT1-209	1146	No protein	-	lncRNA	-	-
ENST00000647919.2	SCAT1-206	1143	No protein	-	lncRNA	-	-
ENST00000648404.1	SCAT1-211	1083	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000648562.2	SCAT1-212	1063	No protein	-	lncRNA	-	-
ENST00000649791.1	SCAT1-218	1006	No protein	-	lncRNA	-	-
ENST00000663352.1	SCAT1-226	999	No protein	-	lncRNA	-	-
ENST00000591384.7	SCAT1-203	980	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000664798.1	SCAT1-227	969	No protein	-	lncRNA	-	-
ENST00000649880.2	SCAT1-219	962	No protein	-	lncRNA	-	-
ENST00000665544.1	SCAT1-228	942	No protein	-	lncRNA	-	-
ENST00000649700.2	SCAT1-217	939	No protein	-	lncRNA	-	-
ENST00000669040.1	SCAT1-233	911	No protein	-	lncRNA	-	-
ENST00000650316.2	SCAT1-221	875	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000590023.6	SCAT1-202	862	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000647961.1	SCAT1-208	860	No protein	-	lncRNA	-	-
ENST00000650520.1	SCAT1-223	850	No protein	-	lncRNA	-	-
ENST00000666340.1	SCAT1-230	845	No protein	-	lncRNA	-	-
ENST00000667424.1	SCAT1-232	841	No protein	-	lncRNA	-	-
ENST00000666453.1	SCAT1-231	828	No protein	-	lncRNA	-	-
ENST00000647878.1	SCAT1-205	828	No protein	-	lncRNA	-	-
ENST00000650475.1	SCAT1-222	788	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000669841.1	SCAT1-234	734	No protein	-	lncRNA	-	-
ENST00000650625.1	SCAT1-224	734	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000652831.1	SCAT1-225	722	No protein	-	lncRNA	-	-
ENST00000665836.1	SCAT1-229	703	No protein	-	lncRNA	-	-
ENST00000647847.2	SCAT1-204	671	No protein	-	lncRNA	-	-
ENST00000649349.1	SCAT1-214	500	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 962 bps,

Version

ENST00000649880.2

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Annotation Attributes

RNA-Seq supported only [Definitions]

Transcript: ENST00000649880.2 SCAT1-219

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENST00000649880.2 SCAT1-219

Summary

About Us

Get help

Our sister sites

Follow us