Transcript: ENST00000649254.1 LINC00393-207

Description

long intergenic non-protein coding RNA 393 [Source:HGNC Symbol;Acc:HGNC:42721]

Location

Chromosome 13: 73,545,901-73,574,295 reverse strand.

About this transcript

This transcript has 4 exons and maps to 57 oligo probes.

Gene

This transcript is a product of gene ENSG00000224853.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000443621.2	LINC00393-201	908	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000650209.1	LINC00393-210	1542	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000648624.2	LINC00393-204	1539	No protein	-	lncRNA	-	-
ENST00000649189.1	LINC00393-206	1389	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000648903.1	LINC00393-205	1344	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000649254.1	LINC00393-207	1148	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000792753.1	LINC00393-214	1146	No protein	-	lncRNA	-	-
ENST00000647940.1	LINC00393-203	1069	No protein	-	lncRNA	-	-
ENST00000649507.3	LINC00393-208	1007	No protein	-	lncRNA	-	-
ENST00000792756.1	LINC00393-217	852	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000792754.1	LINC00393-215	699	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000792755.1	LINC00393-216	663	No protein	-	lncRNA	-	-
ENST00000792752.1	LINC00393-213	659	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000792757.1	LINC00393-218	510	No protein	-	lncRNA	-	-
ENST00000452852.2	LINC00393-202	486	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000792758.1	LINC00393-219	481	No protein	-	lncRNA	-	-
ENST00000792751.1	LINC00393-212	472	No protein	-	lncRNA	-	-
ENST00000792759.1	LINC00393-220	437	No protein	-	lncRNA	-	-
ENST00000792750.1	LINC00393-211	394	No protein	-	lncRNA	-	-
ENST00000792760.1	LINC00393-221	353	No protein	-	lncRNA	-	-
ENST00000649860.1	LINC00393-209	335	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 1,148 bps,

Version

ENST00000649254.1

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported only [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000649254.1 LINC00393-207

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Transcript: ENST00000649254.1 LINC00393-207

Summary

About Us

Get help

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