Transcript: ENST00000648954.1 LINC00511-250

Description

long intergenic non-protein coding RNA 511 [Source:HGNC Symbol;Acc:HGNC:43564]

Gene Synonyms

ONCO-LNCRNA-12

Location

Chromosome 17: 72,586,627-72,592,692 reverse strand.

About this transcript

This transcript has 2 exons and maps to 162 oligo probes.

Gene

This transcript is a product of gene ENSG00000227036.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000650033.1	LINC00511-279	3766	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENST00000650016.1	LINC00511-278	508	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENST00000648631.1	LINC00511-244	2929	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000647652.1	LINC00511-220	3700	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000582712.2	LINC00511-215	2586	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000647706.2	LINC00511-221	2532	No protein	-	lncRNA	-	-
ENST00000649350.1	LINC00511-261	2527	No protein	-	lncRNA	-	-
ENST00000648623.2	LINC00511-243	2522	No protein	-	lncRNA	-	-
ENST00000650131.3	LINC00511-283	2292	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000647953.1	LINC00511-225	2292	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000581549.2	LINC00511-213	2266	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000648401.1	LINC00511-235	2214	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000649793.2	LINC00511-274	2208	No protein	-	lncRNA	-	-
ENST00000650051.1	LINC00511-280	2207	No protein	-	lncRNA	-	-
ENST00000650212.1	LINC00511-289	2174	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000649881.1	LINC00511-276	2078	No protein	-	lncRNA	-	-
ENST00000650371.1	LINC00511-294	2061	No protein	-	lncRNA	-	-
ENST00000649647.1	LINC00511-272	2060	No protein	-	lncRNA	-	-
ENST00000650550.2	LINC00511-302	2041	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000649366.1	LINC00511-262	2028	No protein	-	lncRNA	-	-
ENST00000650313.1	LINC00511-292	1995	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000649250.1	LINC00511-255	1978	No protein	-	lncRNA	-	-
ENST00000647871.2	LINC00511-224	1958	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000649074.1	LINC00511-252	1905	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000648952.1	LINC00511-249	1893	No protein	-	lncRNA	-	-
ENST00000650483.1	LINC00511-299	1888	No protein	-	lncRNA	-	-
ENST00000648520.1	LINC00511-240	1888	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000648411.1	LINC00511-237	1843	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000649433.1	LINC00511-264	1836	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000648297.1	LINC00511-234	1823	No protein	-	lncRNA	-	-
ENST00000649311.1	LINC00511-257	1815	No protein	-	lncRNA	-	-
ENST00000649172.1	LINC00511-253	1788	No protein	-	lncRNA	-	-
ENST00000583460.2	LINC00511-216	1778	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000701652.1	LINC00511-307	1773	No protein	-	lncRNA	-	-
ENST00000649833.1	LINC00511-275	1772	No protein	-	lncRNA	-	-
ENST00000648667.1	LINC00511-245	1751	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000649733.1	LINC00511-273	1742	No protein	-	lncRNA	-	-
ENST00000578206.2	LINC00511-205	1732	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000453722.6	LINC00511-201	1716	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000648069.1	LINC00511-227	1713	No protein	-	lncRNA	-	-
ENST00000647593.1	LINC00511-218	1690	No protein	-	lncRNA	-	-
ENST00000649489.1	LINC00511-266	1682	No protein	-	lncRNA	-	-
ENST00000648176.2	LINC00511-230	1647	No protein	-	lncRNA	-	-
ENST00000457958.7	LINC00511-202	1626	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000648403.1	LINC00511-236	1556	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000649343.1	LINC00511-260	1552	No protein	-	lncRNA	-	-
ENST00000650602.2	LINC00511-306	1510	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000648248.1	LINC00511-233	1468	No protein	-	lncRNA	-	-
ENST00000650423.1	LINC00511-296	1455	No protein	-	lncRNA	-	-
ENST00000648522.1	LINC00511-241	1351	No protein	-	lncRNA	-	-
ENST00000650083.1	LINC00511-281	1329	No protein	-	lncRNA	-	-
ENST00000715416.1	LINC00511-308	1284	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000648104.2	LINC00511-229	1264	No protein	-	lncRNA	-	-
ENST00000649597.1	LINC00511-270	1206	No protein	-	lncRNA	-	-
ENST00000650482.1	LINC00511-298	1202	No protein	-	lncRNA	-	-
ENST00000649440.2	LINC00511-265	1159	No protein	-	lncRNA	-	-
ENST00000650227.1	LINC00511-290	1126	No protein	-	lncRNA	-	-
ENST00000649614.1	LINC00511-271	1098	No protein	-	lncRNA	-	-
ENST00000649532.1	LINC00511-267	1045	No protein	-	lncRNA	-	-
ENST00000649407.1	LINC00511-263	1045	No protein	-	lncRNA	-	-
ENST00000648054.1	LINC00511-226	1027	No protein	-	lncRNA	-	-
ENST00000650211.1	LINC00511-288	977	No protein	-	lncRNA	-	-
ENST00000650419.2	LINC00511-295	952	No protein	-	lncRNA	-	-
ENST00000650191.1	LINC00511-286	951	No protein	-	lncRNA	-	-
ENST00000649197.1	LINC00511-254	937	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000577773.3	LINC00511-203	880	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000650289.2	LINC00511-291	862	No protein	-	lncRNA	-	-
ENST00000581183.3	LINC00511-212	860	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000581801.7	LINC00511-214	855	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000648672.2	LINC00511-246	841	No protein	-	lncRNA	-	-
ENST00000650476.1	LINC00511-297	826	No protein	-	lncRNA	-	-
ENST00000649553.1	LINC00511-268	819	No protein	-	lncRNA	-	-
ENST00000649936.1	LINC00511-277	796	No protein	-	lncRNA	-	-
ENST00000650161.1	LINC00511-284	791	No protein	-	lncRNA	-	-
ENST00000649269.1	LINC00511-256	789	No protein	-	lncRNA	-	-
ENST00000648428.1	LINC00511-238	780	No protein	-	lncRNA	-	-
ENST00000647611.1	LINC00511-219	762	No protein	-	lncRNA	-	-
ENST00000650194.2	LINC00511-287	762	No protein	-	lncRNA	-	-
ENST00000648203.1	LINC00511-231	746	No protein	-	lncRNA	-	-
ENST00000648907.1	LINC00511-248	736	No protein	-	lncRNA	-	-
ENST00000580861.2	LINC00511-210	701	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000650510.1	LINC00511-301	692	No protein	-	lncRNA	-	-
ENST00000650180.1	LINC00511-285	691	No protein	-	lncRNA	-	-
ENST00000648954.1	LINC00511-250	689	No protein	-	lncRNA	-	-
ENST00000580199.7	LINC00511-208	678	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000648088.1	LINC00511-228	669	No protein	-	lncRNA	-	-
ENST00000648220.1	LINC00511-232	668	No protein	-	lncRNA	-	-
ENST00000577828.6	LINC00511-204	656	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000650570.1	LINC00511-304	617	No protein	-	lncRNA	-	-
ENST00000580500.5	LINC00511-209	561	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000650554.1	LINC00511-303	514	No protein	-	lncRNA	-	-
ENST00000649332.1	LINC00511-259	509	No protein	-	lncRNA	-	-
ENST00000648840.1	LINC00511-247	502	No protein	-	lncRNA	-	-
ENST00000647735.1	LINC00511-222	496	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000580948.1	LINC00511-211	475	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000649595.2	LINC00511-269	471	No protein	-	lncRNA	-	-
ENST00000579631.2	LINC00511-206	448	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000650357.1	LINC00511-293	325	No protein	-	lncRNA	-	-
ENST00000649013.1	LINC00511-251	266	No protein	-	lncRNA	-	-
ENST00000648559.1	LINC00511-242	261	No protein	-	lncRNA	-	-
ENST00000650499.1	LINC00511-300	231	No protein	-	lncRNA	-	-
ENST00000649330.1	LINC00511-258	230	No protein	-	lncRNA	-	-
ENST00000648500.1	LINC00511-239	219	No protein	-	lncRNA	-	-
ENST00000580175.2	LINC00511-207	208	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000584749.2	LINC00511-217	173	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000650600.1	LINC00511-305	117	No protein	-	lncRNA	-	-
ENST00000647850.1	LINC00511-223	111	No protein	-	lncRNA	-	-
ENST00000650121.1	LINC00511-282	108	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 689 bps,

Version

ENST00000648954.1

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported only [Definitions]

Transcript: ENST00000648954.1 LINC00511-250

Summary

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Transcript: ENST00000648954.1 LINC00511-250

Summary

About Us

Get help

Our sister sites

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