Transcript: ENST00000648636.1 LUCAT1-219

Description

lung cancer associated transcript 1 [Source:HGNC Symbol;Acc:HGNC:48498]

Gene Synonyms

SCAL1, SCAT5

Location

Chromosome 5: 91,302,731-91,314,298 reverse strand.

About this transcript

This transcript has 4 exons and maps to 169 oligo probes.

Gene

This transcript is a product of gene ENSG00000248323.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000650150.1	LUCAT1-249	1357	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000647761.2	LUCAT1-207	3177	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000513626.4	LUCAT1-203	3166	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000648822.1	LUCAT1-224	2666	No protein	-	lncRNA	-	-
ENST00000650017.1	LUCAT1-244	2176	No protein	-	lncRNA	-	-
ENST00000649539.1	LUCAT1-235	2059	No protein	-	lncRNA	-	-
ENST00000650067.1	LUCAT1-246	2024	No protein	-	lncRNA	-	-
ENST00000648075.1	LUCAT1-211	1977	No protein	-	lncRNA	-	-
ENST00000649702.1	LUCAT1-237	1972	No protein	-	lncRNA	-	-
ENST00000650004.1	LUCAT1-242	1913	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000649304.1	LUCAT1-228	1773	No protein	-	lncRNA	-	-
ENST00000650273.1	LUCAT1-251	1757	No protein	-	lncRNA	-	-
ENST00000650008.2	LUCAT1-243	1751	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000648597.2	LUCAT1-218	1717	No protein	-	lncRNA	-	-
ENST00000649969.1	LUCAT1-239	1711	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000670581.1	LUCAT1-261	1614	No protein	-	lncRNA	-	-
ENST00000664701.2	LUCAT1-259	1588	No protein	-	lncRNA	-	-
ENST00000648310.1	LUCAT1-214	1505	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000649467.1	LUCAT1-234	1498	No protein	-	lncRNA	-	-
ENST00000649654.1	LUCAT1-236	1407	No protein	-	lncRNA	-	-
ENST00000668775.1	LUCAT1-260	1359	No protein	-	lncRNA	-	-
ENST00000649392.2	LUCAT1-230	1347	No protein	-	lncRNA	-	-
ENST00000650100.1	LUCAT1-248	1337	No protein	-	lncRNA	-	-
ENST00000648923.1	LUCAT1-226	1300	No protein	-	lncRNA	-	-
ENST00000650583.1	LUCAT1-255	1278	No protein	-	lncRNA	-	-
ENST00000648031.1	LUCAT1-210	1260	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000648905.1	LUCAT1-225	1227	No protein	-	lncRNA	-	-
ENST00000649138.1	LUCAT1-227	1222	No protein	-	lncRNA	-	-
ENST00000650003.1	LUCAT1-241	1212	No protein	-	lncRNA	-	-
ENST00000647807.1	LUCAT1-208	1204	No protein	-	lncRNA	-	-
ENST00000649405.1	LUCAT1-231	1179	No protein	-	lncRNA	-	-
ENST00000730064.1	LUCAT1-306	1178	No protein	-	lncRNA	-	-
ENST00000649447.2	LUCAT1-233	1173	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000648439.1	LUCAT1-216	1149	No protein	-	lncRNA	-	-
ENST00000648137.2	LUCAT1-212	1145	No protein	-	lncRNA	-	-
ENST00000649976.2	LUCAT1-240	1130	No protein	-	lncRNA	-	-
ENST00000730025.1	LUCAT1-267	1120	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000650047.1	LUCAT1-245	1080	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000648683.1	LUCAT1-220	1045	No protein	-	lncRNA	-	-
ENST00000648811.1	LUCAT1-223	1043	No protein	-	lncRNA	-	-
ENST00000647745.1	LUCAT1-205	1042	No protein	-	lncRNA	-	-
ENST00000730024.1	LUCAT1-266	1041	No protein	-	lncRNA	-	-
ENST00000730097.1	LUCAT1-339	1033	No protein	-	lncRNA	-	-
ENST00000730068.1	LUCAT1-310	1031	No protein	-	lncRNA	-	-
ENST00000660484.2	LUCAT1-258	1023	No protein	-	lncRNA	-	-
ENST00000653155.2	LUCAT1-256	1014	No protein	-	lncRNA	-	-
ENST00000650321.1	LUCAT1-252	1012	No protein	-	lncRNA	-	-
ENST00000648773.2	LUCAT1-222	1010	No protein	-	lncRNA	-	-
ENST00000730071.1	LUCAT1-313	1010	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000730036.1	LUCAT1-278	1009	No protein	-	lncRNA	-	-
ENST00000730085.1	LUCAT1-327	991	No protein	-	lncRNA	-	-
ENST00000650261.1	LUCAT1-250	969	No protein	-	lncRNA	-	-
ENST00000648636.1	LUCAT1-219	967	No protein	-	lncRNA	-	-
ENST00000648199.2	LUCAT1-213	963	No protein	-	lncRNA	-	-
ENST00000648385.1	LUCAT1-215	960	No protein	-	lncRNA	-	-
ENST00000730041.1	LUCAT1-283	951	No protein	-	lncRNA	-	-
ENST00000654784.2	LUCAT1-257	944	No protein	-	lncRNA	-	-
ENST00000513492.6	LUCAT1-202	935	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000648015.1	LUCAT1-209	917	No protein	-	lncRNA	-	-
ENST00000730070.1	LUCAT1-312	912	No protein	-	lncRNA	-	-
ENST00000730086.1	LUCAT1-328	893	No protein	-	lncRNA	-	-
ENST00000730044.1	LUCAT1-286	892	No protein	-	lncRNA	-	-
ENST00000730058.1	LUCAT1-300	871	No protein	-	lncRNA	-	-
ENST00000649322.1	LUCAT1-229	857	No protein	-	lncRNA	-	-
ENST00000730063.1	LUCAT1-305	851	No protein	-	lncRNA	-	-
ENST00000687742.2	LUCAT1-263	849	No protein	-	lncRNA	-	-
ENST00000730067.1	LUCAT1-309	832	No protein	-	lncRNA	-	-
ENST00000650529.1	LUCAT1-254	820	No protein	-	lncRNA	-	-
ENST00000650381.1	LUCAT1-253	798	No protein	-	lncRNA	-	-
ENST00000650098.1	LUCAT1-247	793	No protein	-	lncRNA	-	-
ENST00000730073.1	LUCAT1-315	790	No protein	-	lncRNA	-	-
ENST00000730088.1	LUCAT1-330	781	No protein	-	lncRNA	-	-
ENST00000730027.1	LUCAT1-269	775	No protein	-	lncRNA	-	-
ENST00000730062.1	LUCAT1-304	767	No protein	-	lncRNA	-	-
ENST00000730054.1	LUCAT1-296	752	No protein	-	lncRNA	-	-
ENST00000730069.1	LUCAT1-311	749	No protein	-	lncRNA	-	-
ENST00000730037.1	LUCAT1-279	738	No protein	-	lncRNA	-	-
ENST00000511918.6	LUCAT1-201	737	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000730047.1	LUCAT1-289	734	No protein	-	lncRNA	-	-
ENST00000730065.1	LUCAT1-307	731	No protein	-	lncRNA	-	-
ENST00000730043.1	LUCAT1-285	694	No protein	-	lncRNA	-	-
ENST00000730057.1	LUCAT1-299	686	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000730098.1	LUCAT1-340	686	No protein	-	lncRNA	-	-
ENST00000730074.1	LUCAT1-316	678	No protein	-	lncRNA	-	-
ENST00000730035.1	LUCAT1-277	674	No protein	-	lncRNA	-	-
ENST00000730092.1	LUCAT1-334	674	No protein	-	lncRNA	-	-
ENST00000730052.1	LUCAT1-294	668	No protein	-	lncRNA	-	-
ENST00000730028.1	LUCAT1-270	665	No protein	-	lncRNA	-	-
ENST00000730060.1	LUCAT1-302	662	No protein	-	lncRNA	-	-
ENST00000607854.2	LUCAT1-204	656	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000730045.1	LUCAT1-287	649	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000730038.1	LUCAT1-280	648	No protein	-	lncRNA	-	-
ENST00000649968.1	LUCAT1-238	646	No protein	-	lncRNA	-	-
ENST00000730056.1	LUCAT1-298	645	No protein	-	lncRNA	-	-
ENST00000690504.2	LUCAT1-264	628	No protein	-	lncRNA	-	-
ENST00000648751.3	LUCAT1-221	626	No protein	-	lncRNA	-	-
ENST00000730093.1	LUCAT1-335	621	No protein	-	lncRNA	-	-
ENST00000730094.1	LUCAT1-336	618	No protein	-	lncRNA	-	-
ENST00000730095.1	LUCAT1-337	611	No protein	-	lncRNA	-	-
ENST00000730029.1	LUCAT1-271	609	No protein	-	lncRNA	-	-
ENST00000730066.1	LUCAT1-308	607	No protein	-	lncRNA	-	-
ENST00000647759.1	LUCAT1-206	604	No protein	-	lncRNA	-	-
ENST00000730033.1	LUCAT1-275	603	No protein	-	lncRNA	-	-
ENST00000649424.1	LUCAT1-232	601	No protein	-	lncRNA	-	-
ENST00000730026.1	LUCAT1-268	594	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000730042.1	LUCAT1-284	594	No protein	-	lncRNA	-	-
ENST00000730046.1	LUCAT1-288	586	No protein	-	lncRNA	-	-
ENST00000730079.1	LUCAT1-321	586	No protein	-	lncRNA	-	-
ENST00000730075.1	LUCAT1-317	568	No protein	-	lncRNA	-	-
ENST00000730076.1	LUCAT1-318	566	No protein	-	lncRNA	-	-
ENST00000730051.1	LUCAT1-293	558	No protein	-	lncRNA	-	-
ENST00000730053.1	LUCAT1-295	552	No protein	-	lncRNA	-	-
ENST00000730080.1	LUCAT1-322	550	No protein	-	lncRNA	-	-
ENST00000730061.1	LUCAT1-303	548	No protein	-	lncRNA	-	-
ENST00000730096.1	LUCAT1-338	546	No protein	-	lncRNA	-	-
ENST00000730034.1	LUCAT1-276	544	No protein	-	lncRNA	-	-
ENST00000730089.1	LUCAT1-331	538	No protein	-	lncRNA	-	-
ENST00000690915.2	LUCAT1-265	537	No protein	-	lncRNA	-	-
ENST00000685632.2	LUCAT1-262	535	No protein	-	lncRNA	-	-
ENST00000730055.1	LUCAT1-297	512	No protein	-	lncRNA	-	-
ENST00000730087.1	LUCAT1-329	505	No protein	-	lncRNA	-	-
ENST00000730081.1	LUCAT1-323	499	No protein	-	lncRNA	-	-
ENST00000730090.1	LUCAT1-332	493	No protein	-	lncRNA	-	-
ENST00000730072.1	LUCAT1-314	486	No protein	-	lncRNA	-	-
ENST00000730030.1	LUCAT1-272	474	No protein	-	lncRNA	-	-
ENST00000730091.1	LUCAT1-333	466	No protein	-	lncRNA	-	-
ENST00000730032.1	LUCAT1-274	451	No protein	-	lncRNA	-	-
ENST00000730040.1	LUCAT1-282	451	No protein	-	lncRNA	-	-
ENST00000648457.2	LUCAT1-217	437	No protein	-	lncRNA	-	-
ENST00000730039.1	LUCAT1-281	422	No protein	-	lncRNA	-	-
ENST00000730082.1	LUCAT1-324	422	No protein	-	lncRNA	-	-
ENST00000730077.1	LUCAT1-319	404	No protein	-	lncRNA	-	-
ENST00000730031.1	LUCAT1-273	398	No protein	-	lncRNA	-	-
ENST00000730078.1	LUCAT1-320	372	No protein	-	lncRNA	-	-
ENST00000730059.1	LUCAT1-301	370	No protein	-	lncRNA	-	-
ENST00000730050.1	LUCAT1-292	348	No protein	-	lncRNA	-	-
ENST00000730049.1	LUCAT1-291	342	No protein	-	lncRNA	-	-
ENST00000730083.1	LUCAT1-325	338	No protein	-	lncRNA	-	-
ENST00000730084.1	LUCAT1-326	286	No protein	-	lncRNA	-	-
ENST00000730099.1	LUCAT1-341	286	No protein	-	lncRNA	-	-
ENST00000730048.1	LUCAT1-290	266	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 967 bps,

Version

ENST00000648636.1

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported only [Definitions]

Transcript: ENST00000648636.1 LUCAT1-219

Summary

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Transcript: ENST00000648636.1 LUCAT1-219

Summary

About Us

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