Transcript: ENST00000648435.1 FAM90A23-202

Description

family with sequence similarity 90 member A23 [Source:HGNC Symbol;Acc:HGNC:32271]

Gene Synonyms

FAM90A23P

Location

About this transcript

This transcript has 4 exons, is annotated with 13 domains and features, is associated with 1378 variant alleles and maps to 2438 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000648435.1	FAM90A23-202	1395	464aa	ENSP00000497005.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS94252	A8MXZ1	NM_001397380.1	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 1,395 bps, Translation length: 464 residues

MANE

This MANE Select transcript contains ENSP00000497005 and matches to NM_001397380.1 and NP_001384309.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: A8MXZ1

CCDS

This transcript is a member of the Human CCDS set: CCDS94252

Version

ENST00000648435.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.