Transcript: ENST00000648253.1 GET1-SH3BGR-202

Description

GET1-SH3BGR readthrough [Source:HGNC Symbol;Acc:HGNC:54635]

Location

About this transcript

This transcript has 14 exons, is annotated with 1 domain and feature, is associated with 57022 variant alleles and maps to 584 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000647779.1	GET1-SH3BGR-201	1328	273aa	ENSP00000497977.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3B3ITX9	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENST00000648253.1	GET1-SH3BGR-202	1925	173aa	ENSP00000497295.1	Nonsense mediated decay		A0A3B3ISE9	-	-

Summary

Statistics

Exons: 14, Coding exons: 5, Transcript length: 1,925 bps, Translation length: 173 residues

Version

ENST00000648253.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported only [Definitions]