Transcript: ENST00000646066.1 SAMHD1-219

Description

SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 [Source:HGNC Symbol;Acc:HGNC:15925]

Gene Synonyms

AGS5, HDDC1, MG11, MOP-5, SBBI88

Location

Chromosome 20: 36,892,932-36,951,643 reverse strand.

About this transcript

This transcript has 14 exons, is annotated with 18 domains and features and maps to 539 oligo probes.

Gene

This transcript is a product of gene ENSG00000101347.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000646673.2	SAMHD1-221	4649	626aa	ENSP00000493536.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13288	Q9Y3Z3-1	NM_015474.4	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENST00000262878.5	SAMHD1-201	4334	591aa	ENSP00000262878.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS86953	Q9Y3Z3-4	-	GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000643918.1	SAMHD1-212	2967	589aa	ENSP00000493928.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS86954	A0A2R8YCS7	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000646066.1	SAMHD1-219	1671	556aa	ENSP00000495432.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9Y3Z3-3	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000643825.1	SAMHD1-210	522	139aa	ENSP00000495448.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2R8YFV6	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000465985.2	SAMHD1-202	513	104aa	ENSP00000496075.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2R8YF18	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000645033.1	SAMHD1-217	4680	289aa	ENSP00000494520.1	Nonsense mediated decay		A0A2R8Y5D2	-	-
ENST00000646904.1	SAMHD1-224	4672	285aa	ENSP00000494823.1	Nonsense mediated decay		A0A2R8YF51	-	-
ENST00000642246.1	SAMHD1-204	4508	127aa	ENSP00000494979.1	Nonsense mediated decay		A0A2R8Y7R5	-	-
ENST00000645444.2	SAMHD1-218	4030	289aa	ENSP00000495381.2	Nonsense mediated decay		A0A2R8Y5D2	-	-
ENST00000682773.1	SAMHD1-228	3687	626aa	ENSP00000507178.1	Nonsense mediated decay	CCDS13288	Q9Y3Z3-1	-	-
ENST00000644250.2	SAMHD1-214	3534	591aa	ENSP00000493810.2	Nonsense mediated decay	CCDS86953	Q9Y3Z3-4	-	-
ENST00000647163.1	SAMHD1-226	3440	289aa	ENSP00000494313.1	Nonsense mediated decay		A0A2R8Y5D2	-	-
ENST00000642186.1	SAMHD1-203	3312	289aa	ENSP00000494436.1	Nonsense mediated decay		A0A2R8Y5D2	-	-
ENST00000646869.1	SAMHD1-223	3209	626aa	ENSP00000495667.1	Nonsense mediated decay	CCDS13288	Q9Y3Z3-1	-	-
ENST00000683766.1	SAMHD1-230	2618	626aa	ENSP00000506877.1	Nonsense mediated decay	CCDS13288	Q9Y3Z3-1	-	-
ENST00000683720.1	SAMHD1-229	1919	241aa	ENSP00000508219.1	Nonsense mediated decay		A0A804HL67	-	-
ENST00000644114.2	SAMHD1-213	1809	437aa	ENSP00000494354.2	Nonsense mediated decay		A0A2R8YD90	-	-
ENST00000642616.1	SAMHD1-205	1424	156aa	ENSP00000494271.1	Nonsense mediated decay		A0A2R8Y586	-	-
ENST00000643078.1	SAMHD1-207	1395	127aa	ENSP00000496474.1	Nonsense mediated decay		A0A2R8Y7R5	-	-
ENST00000646866.1	SAMHD1-222	975	129aa	ENSP00000495737.1	Nonsense mediated decay		A0A2R8Y755	-	-
ENST00000646121.1	SAMHD1-220	643	89aa	ENSP00000495645.1	Nonsense mediated decay		A0A2R8YG48	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000643161.1	SAMHD1-208	816	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-	-
ENST00000644370.1	SAMHD1-215	527	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-	-
ENST00000647095.1	SAMHD1-225	5492	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000647459.1	SAMHD1-227	3146	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000644688.2	SAMHD1-216	1700	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000643243.1	SAMHD1-209	1260	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000643003.1	SAMHD1-206	546	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000643907.1	SAMHD1-211	540	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 14, Coding exons: 14, Transcript length: 1,671 bps, Translation length: 556 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9Y3Z3

Version

ENST00000646066.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

confirm experimentally [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000646066.1 SAMHD1-219

Summary

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Transcript: ENST00000646066.1 SAMHD1-219

Summary

About Us

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