Transcript: ENST00000645708.3 UCA1-227

Description

urothelial cancer associated 1 [Source:HGNC Symbol;Acc:HGNC:37126]

Gene Synonyms

CUDR, LINC00178, ONCO-LNCRNA-36, UCAT1

Location

Chromosome 19: 15,828,963-15,835,420 forward strand.

About this transcript

This transcript has 3 exons and maps to 346 oligo probes.

Gene

This transcript is a product of gene ENSG00000214049.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000645805.1	UCA1-229	2365	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000718453.1	UCA1-246	7791	No protein	-	lncRNA	-	-
ENST00000644174.2	UCA1-213	2688	No protein	-	lncRNA	-	-
ENST00000644567.3	UCA1-216	2638	No protein	-	lncRNA	-	-
ENST00000642256.3	UCA1-204	2292	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000397381.7	UCA1-201	2184	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000645764.2	UCA1-228	2001	No protein	-	lncRNA	-	-
ENST00000655191.2	UCA1-237	1991	No protein	-	lncRNA	-	-
ENST00000655708.2	UCA1-238	1939	No protein	-	lncRNA	-	-
ENST00000666830.2	UCA1-243	1921	No protein	-	lncRNA	-	-
ENST00000645177.2	UCA1-223	1840	No protein	-	lncRNA	-	-
ENST00000645156.2	UCA1-222	1733	No protein	-	lncRNA	-	-
ENST00000644400.2	UCA1-214	1707	No protein	-	lncRNA	-	-
ENST00000757094.1	UCA1-250	1484	No protein	-	lncRNA	-	-
ENST00000643552.2	UCA1-208	1465	No protein	-	lncRNA	-	-
ENST00000645708.3	UCA1-227	1378	No protein	-	lncRNA	-	-
ENST00000644845.3	UCA1-220	1348	No protein	-	lncRNA	-	-
ENST00000644103.1	UCA1-212	1337	No protein	-	lncRNA	-	-
ENST00000644796.3	UCA1-219	1320	No protein	-	lncRNA	-	-
ENST00000644962.2	UCA1-221	1301	No protein	-	lncRNA	-	-
ENST00000647185.2	UCA1-235	1299	No protein	-	lncRNA	-	-
ENST00000642894.2	UCA1-207	1294	No protein	-	lncRNA	-	-
ENST00000659568.2	UCA1-240	1293	No protein	-	lncRNA	-	-
ENST00000671188.1	UCA1-245	1287	No protein	-	lncRNA	-	-
ENST00000646397.2	UCA1-233	1219	No protein	-	lncRNA	-	-
ENST00000670862.2	UCA1-244	1199	No protein	-	lncRNA	-	-
ENST00000645221.1	UCA1-224	1191	No protein	-	lncRNA	-	-
ENST00000646494.2	UCA1-234	1189	No protein	-	lncRNA	-	-
ENST00000646128.1	UCA1-232	1174	No protein	-	lncRNA	-	-
ENST00000645251.1	UCA1-225	1155	No protein	-	lncRNA	-	-
ENST00000642269.2	UCA1-205	1125	No protein	-	lncRNA	-	-
ENST00000644730.1	UCA1-218	1122	No protein	-	lncRNA	-	-
ENST00000642440.3	UCA1-206	1120	No protein	-	lncRNA	-	-
ENST00000643846.1	UCA1-211	1084	No protein	-	lncRNA	-	-
ENST00000643818.2	UCA1-210	1060	No protein	-	lncRNA	-	-
ENST00000757093.1	UCA1-249	1033	No protein	-	lncRNA	-	-
ENST00000757092.1	UCA1-248	1008	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000600160.3	UCA1-203	998	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000647292.1	UCA1-236	994	No protein	-	lncRNA	-	-
ENST00000589333.3	UCA1-202	957	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000665604.1	UCA1-242	926	No protein	-	lncRNA	-	-
ENST00000645389.2	UCA1-226	878	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000644590.1	UCA1-217	864	No protein	-	lncRNA	-	-
ENST00000644502.1	UCA1-215	855	No protein	-	lncRNA	-	-
ENST00000645877.1	UCA1-231	720	No protein	-	lncRNA	-	-
ENST00000643567.2	UCA1-209	619	No protein	-	lncRNA	-	-
ENST00000664784.2	UCA1-241	600	No protein	-	lncRNA	-	-
ENST00000645821.2	UCA1-230	594	No protein	-	lncRNA	-	-
ENST00000658824.2	UCA1-239	554	No protein	-	lncRNA	-	-
ENST00000757091.1	UCA1-247	536	No protein	-	lncRNA	-	-
ENST00000757095.1	UCA1-251	520	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 1,378 bps,

Version

ENST00000645708.3

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Annotation Attributes

RNA-Seq supported only [Definitions]

Transcript: ENST00000645708.3 UCA1-227

Summary

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Transcript: ENST00000645708.3 UCA1-227

Summary

About Us

Get help

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