Transcript: ENST00000645308.4 CHMP4A-217

Description

charged multivesicular body protein 4A [Source:HGNC Symbol;Acc:HGNC:20274]

Gene Synonyms

C14ORF123, HSNF7-1, HSPC134, SNF7-1, VPS32A

Location

Scaffold HG1_PATCH: 510,561-514,847 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 18 domains and features, is associated with 2010 variant alleles and maps to 541 oligo probes.

Gene

This transcript is a product of gene ENSG00000285302.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	RefSeq Match	Flags
ENST00000645308.4	CHMP4A-217	1393	222aa	ENSP00000495982.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9BY43-1	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000643482.1	CHMP4A-215	967	117aa	ENSP00000495067.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H0YIN6	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000646546.1	CHMP4A-220	733	213aa	ENSP00000494398.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9PQ80	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000643209.2	CHMP4A-213	1266	123aa	ENSP00000493585.2	Nonsense mediated decay	E9PQI5	-	-
ENST00000642476.1	CHMP4A-211	370	61aa	ENSP00000496459.1	Nonsense mediated decay	H0YI89	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000645604.1	CHMP4A-218	847	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined	-	-	-
ENST00000645924.1	CHMP4A-219	563	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined	-	-	-
ENST00000644812.1	CHMP4A-216	716	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-
ENST00000642729.1	CHMP4A-212	571	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-
ENST00000643263.1	CHMP4A-214	268	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 1,393 bps, Translation length: 222 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9BY43

Version

ENST00000645308.4

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

CAGE supported TSS [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENST00000645308.4 CHMP4A-217

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Transcript: ENST00000645308.4 CHMP4A-217

Summary

About Us

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