Transcript: ENST00000643389.2 SQSTM1-218

Description

sequestosome 1 [Source:HGNC Symbol;Acc:HGNC:11280]

Gene Synonyms

A170, OSIL, P60, P62, P62B, PDB3

Location

Scaffold HG30_PATCH: 586,465-603,638 forward strand.

About this transcript

This transcript has 8 exons, is annotated with 102 domains and features and maps to 560 oligo probes.

Gene

This transcript is a product of gene ENSG00000284099.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000640444.2	SQSTM1-217	2840	440aa	ENSP00000491834.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q13501-1	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000643389.2	SQSTM1-218	2840	440aa	ENSP00000495843.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q13501-1	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 2,840 bps, Translation length: 440 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q13501

Version

ENST00000643389.2

Type

Protein coding

Annotation Method

Annotation produced by aligning human cDNA sequences to the genome using Exonerate's cdna2genome model, which utilises annotation identifying the coding regions of the cDNA sequences, along with protein evidence from UniProtKB, from various species, aligned to the genome using GeneWise. This annotation is used where there is no manual annotation and annotation could not be projected from the primary assembly.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000643389.2 SQSTM1-218

Summary

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Transcript: ENST00000643389.2 SQSTM1-218

Summary

About Us

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