Transcript: ENST00000642343.2 OOSP4B-202

Description

oocyte secreted protein family member 4B [Source:HGNC Symbol;Acc:HGNC:53905]

Location

Chromosome 11: 60,017,181-60,031,095 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 7 domains and features, is associated with 5860 variant alleles and maps to 109 oligo probes.

Gene

This transcript is a product of gene ENSG00000255393.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	RefSeq Match	Flags
ENST00000642343.2	OOSP4B-202	955	160aa	ENSP00000494382.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8Y4Y8	NM_001395278.3	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENST00000644647.1	OOSP4B-203	1483	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined	-	-	-
ENST00000534388.2	OOSP4B-201	952	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 955 bps, Translation length: 160 residues

MANE

This MANE Select transcript contains ENSP00000494382 and matches to NM_001395278.3 and NP_001382207.2

Uniprot

This transcript corresponds to the following Uniprot identifiers: A0A2R8Y4Y8

Version

ENST00000642343.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

inferred transcript model [Definitions]

RNA-Seq supported only

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENST00000642343.2 OOSP4B-202

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Transcript: ENST00000642343.2 OOSP4B-202

Summary

About Us

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