Transcript: ENST00000642077.1 CASC19-276

Description

cancer susceptibility 19 [Source:HGNC Symbol;Acc:HGNC:49476]

Gene Synonyms

CARLO-6, LINC01245

Location

Chromosome 8: 127,168,422-127,218,931 reverse strand.

About this transcript

This transcript has 3 exons and maps to 87 oligo probes.

Gene

This transcript is a product of gene ENSG00000254166.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000641965.1	CASC19-270	2329	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENST00000641584.1	CASC19-242	2114	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENST00000642088.1	CASC19-278	2091	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENST00000641392.2	CASC19-226	1855	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENST00000642082.1	CASC19-277	1545	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENST00000641582.1	CASC19-241	1421	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENST00000641510.1	CASC19-236	1384	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENST00000641919.1	CASC19-265	1172	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENST00000641514.1	CASC19-237	1074	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENST00000641073.1	CASC19-210	1065	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENST00000641262.1	CASC19-219	832	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENST00000521815.2	CASC19-202	561	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000730755.1	CASC19-290	958	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000500112.3	CASC19-201	5768	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000641365.1	CASC19-225	2219	No protein	-	lncRNA	-	-
ENST00000641701.1	CASC19-251	2204	No protein	-	lncRNA	-	-
ENST00000730781.1	CASC19-316	2195	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000641001.1	CASC19-204	2055	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000641828.1	CASC19-260	2001	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000642142.1	CASC19-284	1868	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000641414.2	CASC19-228	1701	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000641853.1	CASC19-261	1638	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000641625.1	CASC19-246	1606	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000641523.2	CASC19-238	1601	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000642118.2	CASC19-281	1559	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000641588.1	CASC19-243	1546	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000641421.1	CASC19-230	1530	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000641218.2	CASC19-218	1525	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000641171.1	CASC19-214	1493	No protein	-	lncRNA	-	-
ENST00000642018.2	CASC19-274	1477	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000641719.1	CASC19-254	1443	No protein	-	lncRNA	-	-
ENST00000664744.1	CASC19-287	1431	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000641028.1	CASC19-206	1430	No protein	-	lncRNA	-	-
ENST00000641964.1	CASC19-269	1415	No protein	-	lncRNA	-	-
ENST00000641013.1	CASC19-205	1411	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000641309.2	CASC19-221	1405	No protein	-	lncRNA	-	-
ENST00000641880.1	CASC19-263	1404	No protein	-	lncRNA	-	-
ENST00000641733.1	CASC19-255	1385	No protein	-	lncRNA	-	-
ENST00000641418.1	CASC19-229	1373	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000641674.2	CASC19-248	1365	No protein	-	lncRNA	-	-
ENST00000641991.1	CASC19-272	1360	No protein	-	lncRNA	-	-
ENST00000642102.1	CASC19-280	1351	No protein	-	lncRNA	-	-
ENST00000641704.2	CASC19-252	1336	No protein	-	lncRNA	-	-
ENST00000641056.1	CASC19-208	1292	No protein	-	lncRNA	-	-
ENST00000641153.2	CASC19-212	1290	No protein	-	lncRNA	-	-
ENST00000641411.1	CASC19-227	1285	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000641604.1	CASC19-244	1251	No protein	-	lncRNA	-	-
ENST00000641480.1	CASC19-232	1244	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000641106.2	CASC19-211	1207	No protein	-	lncRNA	-	-
ENST00000642126.1	CASC19-282	1206	No protein	-	lncRNA	-	-
ENST00000641912.1	CASC19-264	1184	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000641321.1	CASC19-222	1173	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000641488.2	CASC19-234	1160	No protein	-	lncRNA	-	-
ENST00000641496.2	CASC19-235	1157	No protein	-	lncRNA	-	-
ENST00000641425.1	CASC19-231	1156	No protein	-	lncRNA	-	-
ENST00000641362.1	CASC19-224	1146	No protein	-	lncRNA	-	-
ENST00000641179.1	CASC19-216	1140	No protein	-	lncRNA	-	-
ENST00000657669.1	CASC19-285	1127	No protein	-	lncRNA	-	-
ENST00000641944.1	CASC19-267	1117	No protein	-	lncRNA	-	-
ENST00000641642.2	CASC19-247	1108	No protein	-	lncRNA	-	-
ENST00000641162.1	CASC19-213	1091	No protein	-	lncRNA	-	-
ENST00000730761.1	CASC19-296	1079	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000641357.1	CASC19-223	1069	No protein	-	lncRNA	-	-
ENST00000641578.1	CASC19-240	1061	No protein	-	lncRNA	-	-
ENST00000641934.1	CASC19-266	1050	No protein	-	lncRNA	-	-
ENST00000641029.1	CASC19-207	1047	No protein	-	lncRNA	-	-
ENST00000730766.1	CASC19-301	1003	No protein	-	lncRNA	-	-
ENST00000642077.1	CASC19-276	993	No protein	-	lncRNA	-	-
ENST00000730759.1	CASC19-294	990	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000730767.1	CASC19-302	981	No protein	-	lncRNA	-	-
ENST00000641298.1	CASC19-220	974	No protein	-	lncRNA	-	-
ENST00000641487.1	CASC19-233	966	No protein	-	lncRNA	-	-
ENST00000641746.2	CASC19-256	960	No protein	-	lncRNA	-	-
ENST00000641174.1	CASC19-215	959	No protein	-	lncRNA	-	-
ENST00000730774.1	CASC19-309	949	No protein	-	lncRNA	-	-
ENST00000730764.1	CASC19-299	930	No protein	-	lncRNA	-	-
ENST00000642010.1	CASC19-273	925	No protein	-	lncRNA	-	-
ENST00000641547.1	CASC19-239	915	No protein	-	lncRNA	-	-
ENST00000730762.1	CASC19-297	907	No protein	-	lncRNA	-	-
ENST00000730756.1	CASC19-291	894	No protein	-	lncRNA	-	-
ENST00000641696.1	CASC19-250	886	No protein	-	lncRNA	-	-
ENST00000641187.1	CASC19-217	875	No protein	-	lncRNA	-	-
ENST00000641681.1	CASC19-249	871	No protein	-	lncRNA	-	-
ENST00000642134.1	CASC19-283	870	No protein	-	lncRNA	-	-
ENST00000641867.1	CASC19-262	866	No protein	-	lncRNA	-	-
ENST00000663628.1	CASC19-286	863	No protein	-	lncRNA	-	-
ENST00000641794.1	CASC19-258	857	No protein	-	lncRNA	-	-
ENST00000641968.1	CASC19-271	842	No protein	-	lncRNA	-	-
ENST00000641706.1	CASC19-253	818	No protein	-	lncRNA	-	-
ENST00000641786.1	CASC19-257	816	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000730760.1	CASC19-295	802	No protein	-	lncRNA	-	-
ENST00000730765.1	CASC19-300	799	No protein	-	lncRNA	-	-
ENST00000730757.1	CASC19-292	797	No protein	-	lncRNA	-	-
ENST00000730769.1	CASC19-304	793	No protein	-	lncRNA	-	-
ENST00000730763.1	CASC19-298	779	No protein	-	lncRNA	-	-
ENST00000730758.1	CASC19-293	771	No protein	-	lncRNA	-	-
ENST00000641615.1	CASC19-245	770	No protein	-	lncRNA	-	-
ENST00000730772.1	CASC19-307	761	No protein	-	lncRNA	-	-
ENST00000641060.1	CASC19-209	679	No protein	-	lncRNA	-	-
ENST00000642100.1	CASC19-279	656	No protein	-	lncRNA	-	-
ENST00000730768.1	CASC19-303	623	No protein	-	lncRNA	-	-
ENST00000730775.1	CASC19-310	615	No protein	-	lncRNA	-	-
ENST00000730777.1	CASC19-312	610	No protein	-	lncRNA	-	-
ENST00000523510.1	CASC19-203	575	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000641953.1	CASC19-268	571	No protein	-	lncRNA	-	-
ENST00000730784.1	CASC19-319	544	No protein	-	lncRNA	-	-
ENST00000730780.1	CASC19-315	469	No protein	-	lncRNA	-	-
ENST00000730773.1	CASC19-308	466	No protein	-	lncRNA	-	-
ENST00000701231.1	CASC19-289	465	No protein	-	lncRNA	-	-
ENST00000701073.1	CASC19-288	463	No protein	-	lncRNA	-	-
ENST00000730783.1	CASC19-318	449	No protein	-	lncRNA	-	-
ENST00000730770.1	CASC19-305	437	No protein	-	lncRNA	-	-
ENST00000730778.1	CASC19-313	427	No protein	-	lncRNA	-	-
ENST00000730782.1	CASC19-317	405	No protein	-	lncRNA	-	-
ENST00000730776.1	CASC19-311	393	No protein	-	lncRNA	-	-
ENST00000730779.1	CASC19-314	387	No protein	-	lncRNA	-	-
ENST00000730771.1	CASC19-306	374	No protein	-	lncRNA	-	-
ENST00000641825.1	CASC19-259	356	No protein	-	lncRNA	-	-
ENST00000642076.1	CASC19-275	165	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 993 bps,

Version

ENST00000642077.1

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported only [Definitions]

Transcript: ENST00000642077.1 CASC19-276

Summary

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Transcript: ENST00000642077.1 CASC19-276

Summary

About Us

Get help

Our sister sites

Follow us