Transcript: ENST00000641295.1 SAMMSON-212

Description

survival associated mitochondrial melanoma specific oncogenic non-coding RNA [Source:HGNC Symbol;Acc:HGNC:49644]

Gene Synonyms

LINC01212

Location

Chromosome 3: 69,999,572-70,184,197 forward strand.

About this transcript

This transcript has 6 exons and maps to 91 oligo probes.

Gene

This transcript is a product of gene ENSG00000240405.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000641901.2	SAMMSON-222	2865	No protein	-	lncRNA	NR_190186.1	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000641005.1	SAMMSON-203	2168	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000483525.3	SAMMSON-201	2056	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000641601.1	SAMMSON-218	1847	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000641532.1	SAMMSON-217	1657	No protein	-	lncRNA	-	-
ENST00000641286.1	SAMMSON-211	1645	No protein	-	lncRNA	-	-
ENST00000642089.1	SAMMSON-226	1582	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000642114.2	SAMMSON-227	1565	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000641715.1	SAMMSON-221	1546	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000641336.1	SAMMSON-213	1521	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000641053.1	SAMMSON-206	1516	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000641295.1	SAMMSON-212	1487	No protein	-	lncRNA	-	-
ENST00000488861.7	SAMMSON-202	1443	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000641043.1	SAMMSON-205	1377	No protein	-	lncRNA	-	-
ENST00000671630.1	SAMMSON-228	1368	No protein	-	lncRNA	-	-
ENST00000641014.1	SAMMSON-204	1355	No protein	-	lncRNA	-	-
ENST00000641260.1	SAMMSON-210	1308	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000641395.1	SAMMSON-214	1264	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000769907.1	SAMMSON-229	1248	No protein	-	lncRNA	-	-
ENST00000641923.1	SAMMSON-223	1213	No protein	-	lncRNA	-	-
ENST00000641648.1	SAMMSON-220	1207	No protein	-	lncRNA	-	-
ENST00000642004.1	SAMMSON-225	1199	No protein	-	lncRNA	-	-
ENST00000641128.1	SAMMSON-207	1169	No protein	-	lncRNA	-	-
ENST00000641635.1	SAMMSON-219	1162	No protein	-	lncRNA	-	-
ENST00000641457.1	SAMMSON-216	1110	No protein	-	lncRNA	-	-
ENST00000641222.1	SAMMSON-209	1100	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000641431.1	SAMMSON-215	1046	No protein	-	lncRNA	-	-
ENST00000769908.1	SAMMSON-230	1041	No protein	-	lncRNA	-	-
ENST00000769910.1	SAMMSON-232	1002	No protein	-	lncRNA	-	-
ENST00000842478.1	SAMMSON-234	965	No protein	-	lncRNA	-	-
ENST00000641194.2	SAMMSON-208	919	No protein	-	lncRNA	-	-
ENST00000769911.1	SAMMSON-233	872	No protein	-	lncRNA	-	-
ENST00000641929.2	SAMMSON-224	853	No protein	-	lncRNA	-	-
ENST00000769909.1	SAMMSON-231	811	No protein	-	lncRNA	-	-
ENST00000842479.1	SAMMSON-235	525	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 6, Coding exons: 0, Transcript length: 1,487 bps,

Version

ENST00000641295.1

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported only [Definitions]

Transcript: ENST00000641295.1 SAMMSON-212

Summary

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Transcript: ENST00000641295.1 SAMMSON-212

Summary

About Us

Get help

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