Transcript: ENST00000640121.1 FAM238C-204

Description

family with sequence similarity 238 member C [Source:HGNC Symbol;Acc:HGNC:24672]

Gene Synonyms

BB27G4.1, C10ORF51, LINC00202, LINC00202-1, NCRNA00202

Location

Chromosome 10: 26,931,206-26,942,001 reverse strand.

About this transcript

This transcript has 5 exons and maps to 421 oligo probes.

Gene

This transcript is a product of gene ENSG00000290706.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000817033.1	FAM238C-206	546	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000640121.1	FAM238C-204	3620	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000639963.1	FAM238C-203	1787	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000817047.1	FAM238C-220	1317	No protein	-	lncRNA	-	-
ENST00000640224.1	FAM238C-205	1268	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000817034.1	FAM238C-207	1203	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000817041.1	FAM238C-214	1202	No protein	-	lncRNA	-	-
ENST00000817052.1	FAM238C-225	1172	No protein	-	lncRNA	-	-
ENST00000817050.1	FAM238C-223	1153	No protein	-	lncRNA	-	-
ENST00000817054.1	FAM238C-227	1080	No protein	-	lncRNA	-	-
ENST00000817038.1	FAM238C-211	1074	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000817045.1	FAM238C-218	1059	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000817042.1	FAM238C-215	1047	No protein	-	lncRNA	-	-
ENST00000817039.1	FAM238C-212	1040	No protein	-	lncRNA	-	-
ENST00000817043.1	FAM238C-216	1034	No protein	-	lncRNA	-	-
ENST00000817051.1	FAM238C-224	1018	No protein	-	lncRNA	-	-
ENST00000817044.1	FAM238C-217	985	No protein	-	lncRNA	-	-
ENST00000817037.1	FAM238C-210	964	No protein	-	lncRNA	-	-
ENST00000817035.1	FAM238C-208	931	No protein	-	lncRNA	-	-
ENST00000817040.1	FAM238C-213	930	No protein	-	lncRNA	-	-
ENST00000817046.1	FAM238C-219	882	No protein	-	lncRNA	-	-
ENST00000638416.1	FAM238C-202	868	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000817049.1	FAM238C-222	852	No protein	-	lncRNA	-	-
ENST00000817036.1	FAM238C-209	818	No protein	-	lncRNA	-	-
ENST00000817048.1	FAM238C-221	786	No protein	-	lncRNA	-	-
ENST00000817055.1	FAM238C-228	728	No protein	-	lncRNA	-	-
ENST00000817053.1	FAM238C-226	722	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 3,620 bps,

Transcript Support Level (TSL)

TSL:1

Version

ENST00000640121.1

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

overlaps pseudogene [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000640121.1 FAM238C-204

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENST00000640121.1 FAM238C-204

Summary

About Us

Get help

Our sister sites

Follow us