Transcript: ENST00000639556.1 TOP3A-227

Description

DNA topoisomerase III alpha [Source:HGNC Symbol;Acc:HGNC:11992]

Gene Synonyms

TOP3, ZGRF7

Location

Scaffold HSCHR17_3_CTG1: 40,549-43,187 reverse strand.

About this transcript

This transcript has 2 exons and maps to 53 oligo probes.

Gene

This transcript is a product of gene ENSG00000284238.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	RefSeq Match	Flags
ENST00000640743.2	TOP3A-236	6596	1001aa	ENSP00000491689.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q13472-1	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000639065.1	TOP3A-223	2929	976aa	ENSP00000491260.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q13472-2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000639180.1	TOP3A-224	582	25aa	ENSP00000491282.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	K7EL07	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000640917.1	TOP3A-238	3661	69aa	ENSP00000491978.1	Nonsense mediated decay	J3KRR9	-	-
ENST00000640167.1	TOP3A-231	3239	89aa	ENSP00000492470.1	Nonsense mediated decay	J3KS96	-	-
ENST00000640882.1	TOP3A-237	823	139aa	ENSP00000491258.1	Nonsense mediated decay	J3QR18	-	-
ENST00000639826.1	TOP3A-229	766	163aa	ENSP00000491577.1	Nonsense mediated decay	K7EMT6	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000640624.1	TOP3A-234	575	95aa	ENSP00000492504.1	Nonsense mediated decay	J3QS25	-	-
ENST00000640740.1	TOP3A-235	553	133aa	ENSP00000492861.1	Nonsense mediated decay	K7ELI7	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000639383.1	TOP3A-226	503	52aa	ENSP00000492689.1	Nonsense mediated decay	K7EJ41	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000639253.1	TOP3A-225	588	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined	-	-	-
ENST00000640265.1	TOP3A-232	580	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined	-	-	-
ENST00000639567.1	TOP3A-228	545	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined	-	-	-
ENST00000639858.1	TOP3A-230	3196	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-
ENST00000638340.1	TOP3A-220	1465	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-
ENST00000638770.1	TOP3A-222	913	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-
ENST00000638535.1	TOP3A-221	727	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-
ENST00000639556.1	TOP3A-227	600	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-
ENST00000640286.1	TOP3A-233	474	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 600 bps,

Version

ENST00000639556.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENST00000639556.1 TOP3A-227

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Transcript: ENST00000639556.1 TOP3A-227

Summary

About Us

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