Transcript: ENST00000638862.2 ZNF888-202

Description

zinc finger protein 888 [Source:HGNC Symbol;Acc:HGNC:38695]

Location

Chromosome 19: 52,904,415-52,923,428 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 103 domains and features, is associated with 10056 variant alleles and maps to 474 oligo probes.

Gene

This transcript is a product of gene ENSG00000213793.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000638862.2	ZNF888-202	4144	718aa	ENSP00000491567.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS86801	P0CJ79	NM_001393938.1	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000596623.2	ZNF888-201	562	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Summary

Statistics

Exons: 5, Coding exons: 3, Transcript length: 4,144 bps, Translation length: 718 residues

MANE

This MANE Select transcript contains ENSP00000491567 and matches to NM_001393938.1 and NP_001380867.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: P0CJ79

CCDS

This transcript is a member of the Human CCDS set: CCDS86801

Transcript Support Level (TSL)

TSL:5

Version

ENST00000638862.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported only [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000638862.2 ZNF888-202

Summary

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Transcript: ENST00000638862.2 ZNF888-202

Summary

About Us

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