Transcript: ENST00000635616.1 LINC01748-205

Description

long intergenic non-protein coding RNA 1748 [Source:HGNC Symbol;Acc:HGNC:52535]

Location

Chromosome 1: 60,539,095-60,622,532 reverse strand.

About this transcript

This transcript has 8 exons and maps to 153 oligo probes.

Gene

This transcript is a product of gene ENSG00000226476.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000661790.1	LINC01748-214	3239	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000635048.2	LINC01748-204	6038	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000634836.1	LINC01748-203	3229	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000634281.1	LINC01748-202	2864	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000660110.1	LINC01748-210	2754	No protein	-	lncRNA	-	-
ENST00000661176.1	LINC01748-213	2625	No protein	-	lncRNA	-	-
ENST00000657534.1	LINC01748-209	2179	No protein	-	lncRNA	-	-
ENST00000635616.1	LINC01748-205	2143	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000661045.1	LINC01748-212	2034	No protein	-	lncRNA	-	-
ENST00000686091.2	LINC01748-228	2029	No protein	-	lncRNA	-	-
ENST00000662037.2	LINC01748-215	1884	No protein	-	lncRNA	-	-
ENST00000671019.1	LINC01748-225	1833	No protein	-	lncRNA	-	-
ENST00000439156.2	LINC01748-201	1798	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000665573.1	LINC01748-219	1731	No protein	-	lncRNA	-	-
ENST00000670448.1	LINC01748-224	1674	No protein	-	lncRNA	-	-
ENST00000662596.1	LINC01748-217	1661	No protein	-	lncRNA	-	-
ENST00000662065.1	LINC01748-216	1551	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000654935.1	LINC01748-207	1536	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000663215.1	LINC01748-218	1360	No protein	-	lncRNA	-	-
ENST00000668078.1	LINC01748-221	1321	No protein	-	lncRNA	-	-
ENST00000660992.1	LINC01748-211	1289	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000668738.1	LINC01748-222	1232	No protein	-	lncRNA	-	-
ENST00000666208.1	LINC01748-220	1211	No protein	-	lncRNA	-	-
ENST00000673767.1	LINC01748-227	1192	No protein	-	lncRNA	-	-
ENST00000656757.1	LINC01748-208	1064	No protein	-	lncRNA	-	-
ENST00000654255.1	LINC01748-206	1046	No protein	-	lncRNA	-	-
ENST00000671035.1	LINC01748-226	995	No protein	-	lncRNA	-	-
ENST00000668888.1	LINC01748-223	994	No protein	-	lncRNA	-	-
ENST00000827529.1	LINC01748-229	796	No protein	-	lncRNA	-	-
ENST00000827530.1	LINC01748-230	633	No protein	-	lncRNA	-	-
ENST00000827533.1	LINC01748-233	522	No protein	-	lncRNA	-	-
ENST00000827535.1	LINC01748-235	502	No protein	-	lncRNA	-	-
ENST00000827538.1	LINC01748-238	489	No protein	-	lncRNA	-	-
ENST00000827534.1	LINC01748-234	431	No protein	-	lncRNA	-	-
ENST00000827532.1	LINC01748-232	405	No protein	-	lncRNA	-	-
ENST00000827531.1	LINC01748-231	402	No protein	-	lncRNA	-	-
ENST00000827536.1	LINC01748-236	401	No protein	-	lncRNA	-	-
ENST00000827537.1	LINC01748-237	344	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 8, Coding exons: 0, Transcript length: 2,143 bps,

Transcript Support Level (TSL)

TSL:5

Version

ENST00000635616.1

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported only [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000635616.1 LINC01748-205

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Transcript: ENST00000635616.1 LINC01748-205

Summary

About Us

Get help

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