Transcript: ENST00000633277.1 CCL16-203

Description

C-C motif chemokine ligand 16 [Source:HGNC Symbol;Acc:HGNC:10614]

Gene Synonyms

CKB12, HCC-4, LCC-1, LEC, LMC, MTN-1, NCC-4, SCYA16, SCYL4

Location

Scaffold HSCHR17_7_CTG4: 211,057-212,827 reverse strand.

About this transcript

This transcript has 3 exons and maps to 166 oligo probes.

Gene

This transcript is a product of gene ENSG00000275095.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	RefSeq Match	Flags
ENST00000621559.2	CCL16-201	1506	120aa	ENSP00000482168.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	O15467	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000631489.1	CCL16-202	1634	53aa	ENSP00000487933.1	Nonsense mediated decay	A0A087WUU4	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000633277.1	CCL16-203	687	95aa	ENSP00000488847.1	Nonsense mediated decay	A0A087WUE5	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 687 bps, Translation length: 95 residues

Transcript Support Level (TSL)

TSL:3

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000633277.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENST00000633277.1 CCL16-203

Summary

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Transcript: ENST00000633277.1 CCL16-203

Summary

About Us

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