Transcript: ENST00000623247.3 CLEC20A-202

Description

C-type lectin domain containing 20A [Source:HGNC Symbol;Acc:HGNC:34521]

Gene Synonyms

FLJ44005, LINC00083, NCRNA00083, RP4-593C16.2

Location

Chromosome 1: 178,479,240-178,496,964 reverse strand.

About this transcript

This transcript has 8 exons, is annotated with 18 domains and features, is associated with 7623 variant alleles and maps to 167 oligo probes.

Gene

This transcript is a product of gene ENSG00000188585.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000623247.3	CLEC20A-202	1523	400aa	ENSP00000490899.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS91118	Q6ZU45	NM_001395331.1	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000646925.1	CLEC20A-204	1051	222aa	ENSP00000493860.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2R8Y4N8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000641292.1	CLEC20A-203	1179	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-	-
ENST00000445098.2	CLEC20A-201	1137	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 1,523 bps, Translation length: 400 residues

MANE

This MANE Select transcript contains ENSP00000490899 and matches to NM_001395331.1 and NP_001382260.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6ZU45

CCDS

This transcript is a member of the Human CCDS set: CCDS91118

Transcript Support Level (TSL)

TSL:5

Version

ENST00000623247.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

inferred exon combination [Definitions]

inferred transcript model

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000623247.3 CLEC20A-202

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Transcript: ENST00000623247.3 CLEC20A-202

Summary

About Us

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