Transcript: ENST00000621861.1 LINC01517-208

Description

long intergenic non-protein coding RNA 1517 [Source:HGNC Symbol;Acc:HGNC:51212]

Location

Chromosome 10: 28,793,677-28,808,127 forward strand.

About this transcript

This transcript has 5 exons and maps to 159 oligo probes.

Gene

This transcript is a product of gene ENSG00000232624.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000621861.1	LINC01517-208	1051	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000646289.1	LINC01517-212	1336	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000645413.1	LINC01517-211	2599	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000375520.4	LINC01517-201	2149	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000614533.3	LINC01517-206	1968	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000722441.1	LINC01517-249	1755	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000647111.2	LINC01517-213	1479	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000644731.1	LINC01517-210	1387	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000754533.1	LINC01517-279	1298	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000643204.1	LINC01517-209	1284	No protein	-	lncRNA	-	-
ENST00000659813.1	LINC01517-216	1266	No protein	-	lncRNA	-	-
ENST00000722433.1	LINC01517-241	1124	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000722448.1	LINC01517-256	1116	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000722437.1	LINC01517-245	1067	No protein	-	lncRNA	-	-
ENST00000722432.1	LINC01517-240	1044	No protein	-	lncRNA	-	-
ENST00000426922.6	LINC01517-202	980	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000722430.1	LINC01517-238	968	No protein	-	lncRNA	-	-
ENST00000722431.1	LINC01517-239	953	No protein	-	lncRNA	-	-
ENST00000722462.1	LINC01517-270	930	No protein	-	lncRNA	-	-
ENST00000722411.1	LINC01517-219	928	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000616194.4	LINC01517-207	908	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000722456.1	LINC01517-264	907	No protein	-	lncRNA	-	-
ENST00000655545.1	LINC01517-215	902	No protein	-	lncRNA	-	-
ENST00000722438.1	LINC01517-246	894	No protein	-	lncRNA	-	-
ENST00000722460.1	LINC01517-268	859	No protein	-	lncRNA	-	-
ENST00000722424.1	LINC01517-232	848	No protein	-	lncRNA	-	-
ENST00000722429.1	LINC01517-237	844	No protein	-	lncRNA	-	-
ENST00000722417.1	LINC01517-225	823	No protein	-	lncRNA	-	-
ENST00000722453.1	LINC01517-261	816	No protein	-	lncRNA	-	-
ENST00000722414.1	LINC01517-222	805	No protein	-	lncRNA	-	-
ENST00000722422.1	LINC01517-230	802	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000722425.1	LINC01517-233	791	No protein	-	lncRNA	-	-
ENST00000722467.1	LINC01517-275	784	No protein	-	lncRNA	-	-
ENST00000722412.1	LINC01517-220	761	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000722419.1	LINC01517-227	755	No protein	-	lncRNA	-	-
ENST00000722420.1	LINC01517-228	752	No protein	-	lncRNA	-	-
ENST00000722434.1	LINC01517-242	751	No protein	-	lncRNA	-	-
ENST00000722459.1	LINC01517-267	746	No protein	-	lncRNA	-	-
ENST00000722435.1	LINC01517-243	744	No protein	-	lncRNA	-	-
ENST00000722445.1	LINC01517-253	743	No protein	-	lncRNA	-	-
ENST00000722446.1	LINC01517-254	743	No protein	-	lncRNA	-	-
ENST00000722442.1	LINC01517-250	734	No protein	-	lncRNA	-	-
ENST00000722416.1	LINC01517-224	718	No protein	-	lncRNA	-	-
ENST00000722466.1	LINC01517-274	713	No protein	-	lncRNA	-	-
ENST00000665621.1	LINC01517-218	707	No protein	-	lncRNA	-	-
ENST00000722457.1	LINC01517-265	694	No protein	-	lncRNA	-	-
ENST00000722436.1	LINC01517-244	691	No protein	-	lncRNA	-	-
ENST00000722427.1	LINC01517-235	690	No protein	-	lncRNA	-	-
ENST00000722421.1	LINC01517-229	686	No protein	-	lncRNA	-	-
ENST00000722423.1	LINC01517-231	681	No protein	-	lncRNA	-	-
ENST00000722450.1	LINC01517-258	677	No protein	-	lncRNA	-	-
ENST00000722455.1	LINC01517-263	674	No protein	-	lncRNA	-	-
ENST00000722415.1	LINC01517-223	634	No protein	-	lncRNA	-	-
ENST00000722463.1	LINC01517-271	610	No protein	-	lncRNA	-	-
ENST00000653558.2	LINC01517-214	598	No protein	-	lncRNA	-	-
ENST00000722452.1	LINC01517-260	588	No protein	-	lncRNA	-	-
ENST00000722468.1	LINC01517-276	580	No protein	-	lncRNA	-	-
ENST00000722454.1	LINC01517-262	575	No protein	-	lncRNA	-	-
ENST00000660375.1	LINC01517-217	568	No protein	-	lncRNA	-	-
ENST00000722465.1	LINC01517-273	563	No protein	-	lncRNA	-	-
ENST00000754531.1	LINC01517-277	560	No protein	-	lncRNA	-	-
ENST00000722440.1	LINC01517-248	558	No protein	-	lncRNA	-	-
ENST00000722418.1	LINC01517-226	550	No protein	-	lncRNA	-	-
ENST00000722443.1	LINC01517-251	546	No protein	-	lncRNA	-	-
ENST00000722451.1	LINC01517-259	544	No protein	-	lncRNA	-	-
ENST00000722444.1	LINC01517-252	541	No protein	-	lncRNA	-	-
ENST00000611112.4	LINC01517-205	539	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000722439.1	LINC01517-247	537	No protein	-	lncRNA	-	-
ENST00000722458.1	LINC01517-266	537	No protein	-	lncRNA	-	-
ENST00000456082.1	LINC01517-203	517	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000754532.1	LINC01517-278	443	No protein	-	lncRNA	-	-
ENST00000722426.1	LINC01517-234	432	No protein	-	lncRNA	-	-
ENST00000722447.1	LINC01517-255	431	No protein	-	lncRNA	-	-
ENST00000722464.1	LINC01517-272	425	No protein	-	lncRNA	-	-
ENST00000722428.1	LINC01517-236	423	No protein	-	lncRNA	-	-
ENST00000722413.1	LINC01517-221	411	No protein	-	lncRNA	-	-
ENST00000722461.1	LINC01517-269	376	No protein	-	lncRNA	-	-
ENST00000722449.1	LINC01517-257	279	No protein	-	lncRNA	-	-
ENST00000603866.1	LINC01517-204	267	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 1,051 bps,

Transcript Support Level (TSL)

TSL:5

Version

ENST00000621861.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

454 RNA-Seq supported [Definitions]

Transcript: ENST00000621861.1 LINC01517-208

Summary

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Transcript: ENST00000621861.1 LINC01517-208

Summary

About Us

Get help

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