Transcript: ENST00000619866.5 PIK3R6-203

Description

phosphoinositide-3-kinase regulatory subunit 6 [Source:HGNC Symbol;Acc:HGNC:27101]

Gene Synonyms

C17ORF38, FLJ34500, HST41028, P87PIKAP

Location

Chromosome 17: 8,802,722-8,867,674 reverse strand.

About this transcript

This transcript has 20 exons, is annotated with 7 domains and features, is associated with 29128 variant alleles and maps to 575 oligo probes.

Gene

This transcript is a product of gene ENSG00000276231.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000619866.5	PIK3R6-203	3053	754aa	ENSP00000480157.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS73985	Q5UE93	NM_001010855.4	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000611951.4	PIK3R6-201	3392	100aa	ENSP00000480685.1	Nonsense mediated decay		A0A087X1F3	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000613555.4	PIK3R6-202	3291	100aa	ENSP00000484155.1	Nonsense mediated decay		A0A087X1F3	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Summary

Statistics

Exons: 20, Coding exons: 19, Transcript length: 3,053 bps, Translation length: 754 residues

MANE

This MANE Select transcript contains ENSP00000480157 and matches to NM_001010855.4 and NP_001010855.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q5UE93

CCDS

This transcript is a member of the Human CCDS set: CCDS73985

Transcript Support Level (TSL)

TSL:5

Version

ENST00000619866.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Annotation Attributes

RNA-Seq supported only [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000619866.5 PIK3R6-203

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Transcript: ENST00000619866.5 PIK3R6-203

Summary

About Us

Get help

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