Transcript: ENST00000598832.2 LINC01233-202

Description

long intergenic non-protein coding RNA 1233 [Source:HGNC Symbol;Acc:HGNC:49756]

Gene Synonyms

XLOC_013014

Location

Chromosome 19: 22,532,577-22,533,501 forward strand.

About this transcript

This transcript has 2 exons and maps to 235 oligo probes.

Gene

This transcript is a product of gene ENSG00000269364.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000748667.1	LINC01233-204	982	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000748673.1	LINC01233-210	785	No protein	-	lncRNA	-	-
ENST00000748671.1	LINC01233-208	712	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000748676.1	LINC01233-213	678	No protein	-	lncRNA	-	-
ENST00000748670.1	LINC01233-207	647	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000748668.1	LINC01233-205	638	No protein	-	lncRNA	-	-
ENST00000594200.2	LINC01233-201	634	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000598832.2	LINC01233-202	624	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000748680.1	LINC01233-217	582	No protein	-	lncRNA	-	-
ENST00000748672.1	LINC01233-209	545	No protein	-	lncRNA	-	-
ENST00000748669.1	LINC01233-206	525	No protein	-	lncRNA	-	-
ENST00000748674.1	LINC01233-211	512	No protein	-	lncRNA	-	-
ENST00000601708.1	LINC01233-203	494	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000748681.1	LINC01233-218	471	No protein	-	lncRNA	-	-
ENST00000748675.1	LINC01233-212	462	No protein	-	lncRNA	-	-
ENST00000748679.1	LINC01233-216	458	No protein	-	lncRNA	-	-
ENST00000748677.1	LINC01233-214	450	No protein	-	lncRNA	-	-
ENST00000748678.1	LINC01233-215	425	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000748682.1	LINC01233-219	407	No protein	-	lncRNA	-	-
ENST00000748683.1	LINC01233-220	315	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 624 bps,

Transcript Support Level (TSL)

TSL:2

Version

ENST00000598832.2

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000598832.2 LINC01233-202

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Transcript: ENST00000598832.2 LINC01233-202

Summary

About Us

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