Transcript: ENST00000598084.6 LINC01198-206

Description

long intergenic non-protein coding RNA 1198 [Source:HGNC Symbol;Acc:HGNC:49598]

Location

Chromosome 13: 46,455,135-46,486,506 reverse strand.

About this transcript

This transcript has 5 exons and maps to 222 oligo probes.

Gene

This transcript is a product of gene ENSG00000231817.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000781180.1	LINC01198-255	1332	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000647756.2	LINC01198-210	1649	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000648333.1	LINC01198-217	1536	No protein	-	lncRNA	-	-
ENST00000650240.3	LINC01198-224	1464	No protein	-	lncRNA	-	-
ENST00000647922.2	LINC01198-212	1285	No protein	-	lncRNA	-	-
ENST00000648986.2	LINC01198-221	1271	No protein	-	lncRNA	-	-
ENST00000648133.1	LINC01198-214	1261	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000647866.2	LINC01198-211	1225	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000648245.2	LINC01198-215	1219	No protein	-	lncRNA	-	-
ENST00000669385.1	LINC01198-250	1184	No protein	-	lncRNA	-	-
ENST00000661995.1	LINC01198-239	1183	No protein	-	lncRNA	-	-
ENST00000649546.1	LINC01198-222	1173	No protein	-	lncRNA	-	-
ENST00000664096.1	LINC01198-243	1168	No protein	-	lncRNA	-	-
ENST00000649910.2	LINC01198-223	1162	No protein	-	lncRNA	-	-
ENST00000670209.1	LINC01198-252	1160	No protein	-	lncRNA	-	-
ENST00000655282.1	LINC01198-229	1148	No protein	-	lncRNA	-	-
ENST00000658922.1	LINC01198-234	1144	No protein	-	lncRNA	-	-
ENST00000781182.1	LINC01198-257	1139	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000647744.2	LINC01198-209	1128	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000659597.1	LINC01198-236	1127	No protein	-	lncRNA	-	-
ENST00000657077.1	LINC01198-232	1126	No protein	-	lncRNA	-	-
ENST00000650465.2	LINC01198-226	1125	No protein	-	lncRNA	-	-
ENST00000663664.1	LINC01198-241	1093	No protein	-	lncRNA	-	-
ENST00000667460.1	LINC01198-247	1093	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000671405.1	LINC01198-254	1083	No protein	-	lncRNA	-	-
ENST00000648492.1	LINC01198-220	1076	No protein	-	lncRNA	-	-
ENST00000663219.1	LINC01198-240	1056	No protein	-	lncRNA	-	-
ENST00000666107.1	LINC01198-246	1050	No protein	-	lncRNA	-	-
ENST00000659419.1	LINC01198-235	1047	No protein	-	lncRNA	-	-
ENST00000648255.1	LINC01198-216	1046	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000594153.3	LINC01198-204	1034	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000663741.1	LINC01198-242	1014	No protein	-	lncRNA	-	-
ENST00000656994.1	LINC01198-231	1008	No protein	-	lncRNA	-	-
ENST00000665124.1	LINC01198-245	1008	No protein	-	lncRNA	-	-
ENST00000648471.2	LINC01198-219	1006	No protein	-	lncRNA	-	-
ENST00000781186.1	LINC01198-261	977	No protein	-	lncRNA	-	-
ENST00000653039.1	LINC01198-227	971	No protein	-	lncRNA	-	-
ENST00000593640.7	LINC01198-203	959	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000670134.2	LINC01198-251	937	No protein	-	lncRNA	-	-
ENST00000655939.1	LINC01198-230	919	No protein	-	lncRNA	-	-
ENST00000781181.1	LINC01198-256	903	No protein	-	lncRNA	-	-
ENST00000598084.6	LINC01198-206	881	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000653919.1	LINC01198-228	873	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000660764.1	LINC01198-237	865	No protein	-	lncRNA	-	-
ENST00000594428.7	LINC01198-205	858	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000647588.1	LINC01198-208	851	No protein	-	lncRNA	-	-
ENST00000661606.1	LINC01198-238	849	No protein	-	lncRNA	-	-
ENST00000648041.2	LINC01198-213	830	No protein	-	lncRNA	-	-
ENST00000658378.1	LINC01198-233	820	No protein	-	lncRNA	-	-
ENST00000781185.1	LINC01198-260	819	No protein	-	lncRNA	-	-
ENST00000781187.1	LINC01198-262	810	No protein	-	lncRNA	-	-
ENST00000667917.2	LINC01198-248	799	No protein	-	lncRNA	-	-
ENST00000668563.1	LINC01198-249	768	No protein	-	lncRNA	-	-
ENST00000671320.1	LINC01198-253	759	No protein	-	lncRNA	-	-
ENST00000664325.1	LINC01198-244	723	No protein	-	lncRNA	-	-
ENST00000650383.1	LINC01198-225	672	No protein	-	lncRNA	-	-
ENST00000781188.1	LINC01198-263	666	No protein	-	lncRNA	-	-
ENST00000781183.1	LINC01198-258	660	No protein	-	lncRNA	-	-
ENST00000648348.1	LINC01198-218	636	No protein	-	lncRNA	-	-
ENST00000781184.1	LINC01198-259	580	No protein	-	lncRNA	-	-
ENST00000599175.1	LINC01198-207	560	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000458282.2	LINC01198-202	558	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000416521.7	LINC01198-201	546	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 881 bps,

Transcript Support Level (TSL)

TSL:5

Version

ENST00000598084.6

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

nested 454 RNA-Seq supported [Definitions]

RNA-Seq supported only

Transcript: ENST00000598084.6 LINC01198-206

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Transcript: ENST00000598084.6 LINC01198-206

Summary

About Us

Get help

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