Transcript: ENST00000597974.6 LINC02028-209

Description

long intergenic non-protein coding RNA 2028 [Source:HGNC Symbol;Acc:HGNC:27718]

Location

Chromosome 3: 194,048,913-194,058,494 reverse strand.

About this transcript

This transcript has 4 exons and maps to 345 oligo probes.

Gene

This transcript is a product of gene ENSG00000230102.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000599735.3	LINC02028-213	726	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000601524.5	LINC02028-214	616	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000753597.1	LINC02028-258	768	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000432154.5	LINC02028-202	2666	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000656099.1	LINC02028-235	1942	No protein	-	lncRNA	-	-
ENST00000665355.2	LINC02028-247	1915	No protein	-	lncRNA	-	-
ENST00000753675.1	LINC02028-336	1772	No protein	-	lncRNA	-	-
ENST00000593326.6	LINC02028-206	1689	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000753613.1	LINC02028-274	1605	No protein	-	lncRNA	-	-
ENST00000753663.1	LINC02028-324	1566	No protein	-	lncRNA	-	-
ENST00000753657.1	LINC02028-318	1535	No protein	-	lncRNA	-	-
ENST00000449350.7	LINC02028-204	1508	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000657966.2	LINC02028-237	1505	No protein	-	lncRNA	-	-
ENST00000670206.1	LINC02028-257	1504	No protein	-	lncRNA	-	-
ENST00000626476.3	LINC02028-225	1461	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000753614.1	LINC02028-275	1436	No protein	-	lncRNA	-	-
ENST00000656867.1	LINC02028-236	1278	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000753658.1	LINC02028-319	1265	No protein	-	lncRNA	-	-
ENST00000666539.2	LINC02028-249	1252	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000659267.1	LINC02028-239	1219	No protein	-	lncRNA	-	-
ENST00000654593.1	LINC02028-234	1186	No protein	-	lncRNA	-	-
ENST00000753621.1	LINC02028-282	1183	No protein	-	lncRNA	-	-
ENST00000753626.1	LINC02028-287	1182	No protein	-	lncRNA	-	-
ENST00000601913.2	LINC02028-215	1169	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000653573.2	LINC02028-232	1157	No protein	-	lncRNA	-	-
ENST00000753615.1	LINC02028-276	1157	No protein	-	lncRNA	-	-
ENST00000753622.1	LINC02028-283	1145	No protein	-	lncRNA	-	-
ENST00000668727.1	LINC02028-254	1137	No protein	-	lncRNA	-	-
ENST00000668599.1	LINC02028-252	1135	No protein	-	lncRNA	-	-
ENST00000669285.1	LINC02028-256	1134	No protein	-	lncRNA	-	-
ENST00000753616.1	LINC02028-277	1106	No protein	-	lncRNA	-	-
ENST00000666958.1	LINC02028-250	1095	No protein	-	lncRNA	-	-
ENST00000622169.5	LINC02028-221	1092	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000625668.3	LINC02028-223	1086	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000753618.1	LINC02028-279	1085	No protein	-	lncRNA	-	-
ENST00000660199.1	LINC02028-241	1061	No protein	-	lncRNA	-	-
ENST00000753635.1	LINC02028-296	1060	No protein	-	lncRNA	-	-
ENST00000658493.1	LINC02028-238	1036	No protein	-	lncRNA	-	-
ENST00000753647.1	LINC02028-308	1025	No protein	-	lncRNA	-	-
ENST00000669236.1	LINC02028-255	1021	No protein	-	lncRNA	-	-
ENST00000663517.1	LINC02028-246	1019	No protein	-	lncRNA	-	-
ENST00000753636.1	LINC02028-297	1018	No protein	-	lncRNA	-	-
ENST00000668675.2	LINC02028-253	1006	No protein	-	lncRNA	-	-
ENST00000753678.1	LINC02028-339	1005	No protein	-	lncRNA	-	-
ENST00000598535.6	LINC02028-210	1003	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000753659.1	LINC02028-320	993	No protein	-	lncRNA	-	-
ENST00000753619.1	LINC02028-280	984	No protein	-	lncRNA	-	-
ENST00000753667.1	LINC02028-328	954	No protein	-	lncRNA	-	-
ENST00000660282.2	LINC02028-242	947	No protein	-	lncRNA	-	-
ENST00000753624.1	LINC02028-285	942	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000753634.1	LINC02028-295	941	No protein	-	lncRNA	-	-
ENST00000654490.1	LINC02028-233	939	No protein	-	lncRNA	-	-
ENST00000665835.1	LINC02028-248	935	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000753666.1	LINC02028-327	928	No protein	-	lncRNA	-	-
ENST00000753603.1	LINC02028-264	927	No protein	-	lncRNA	-	-
ENST00000753646.1	LINC02028-307	927	No protein	-	lncRNA	-	-
ENST00000662513.2	LINC02028-245	925	No protein	-	lncRNA	-	-
ENST00000753673.1	LINC02028-334	922	No protein	-	lncRNA	-	-
ENST00000753650.1	LINC02028-311	910	No protein	-	lncRNA	-	-
ENST00000753642.1	LINC02028-303	901	No protein	-	lncRNA	-	-
ENST00000660359.1	LINC02028-243	900	No protein	-	lncRNA	-	-
ENST00000625586.2	LINC02028-222	895	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000593559.6	LINC02028-207	886	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000753623.1	LINC02028-284	883	No protein	-	lncRNA	-	-
ENST00000609933.3	LINC02028-218	848	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000753617.1	LINC02028-278	835	No protein	-	lncRNA	-	-
ENST00000753671.1	LINC02028-332	835	No protein	-	lncRNA	-	-
ENST00000597974.6	LINC02028-209	828	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000753600.1	LINC02028-261	825	No protein	-	lncRNA	-	-
ENST00000753606.1	LINC02028-267	816	No protein	-	lncRNA	-	-
ENST00000609015.6	LINC02028-216	785	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000753656.1	LINC02028-317	784	No protein	-	lncRNA	-	-
ENST00000753607.1	LINC02028-268	780	No protein	-	lncRNA	-	-
ENST00000753653.1	LINC02028-314	779	No protein	-	lncRNA	-	-
ENST00000660052.1	LINC02028-240	778	No protein	-	lncRNA	-	-
ENST00000627894.1	LINC02028-226	778	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000753655.1	LINC02028-316	772	No protein	-	lncRNA	-	-
ENST00000753668.1	LINC02028-329	770	No protein	-	lncRNA	-	-
ENST00000609304.5	LINC02028-217	769	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000753625.1	LINC02028-286	765	No protein	-	lncRNA	-	-
ENST00000753637.1	LINC02028-298	764	No protein	-	lncRNA	-	-
ENST00000753601.1	LINC02028-262	763	No protein	-	lncRNA	-	-
ENST00000667864.1	LINC02028-251	755	No protein	-	lncRNA	-	-
ENST00000753598.1	LINC02028-259	755	No protein	-	lncRNA	-	-
ENST00000753611.1	LINC02028-272	754	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000753677.1	LINC02028-338	750	No protein	-	lncRNA	-	-
ENST00000753649.1	LINC02028-310	742	No protein	-	lncRNA	-	-
ENST00000597775.1	LINC02028-208	737	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000753633.1	LINC02028-294	737	No protein	-	lncRNA	-	-
ENST00000753608.1	LINC02028-269	734	No protein	-	lncRNA	-	-
ENST00000753620.1	LINC02028-281	734	No protein	-	lncRNA	-	-
ENST00000753651.1	LINC02028-312	726	No protein	-	lncRNA	-	-
ENST00000753609.1	LINC02028-270	718	No protein	-	lncRNA	-	-
ENST00000753605.1	LINC02028-266	716	No protein	-	lncRNA	-	-
ENST00000753602.1	LINC02028-263	696	No protein	-	lncRNA	-	-
ENST00000458224.6	LINC02028-205	695	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000753652.1	LINC02028-313	687	No protein	-	lncRNA	-	-
ENST00000753632.1	LINC02028-293	682	No protein	-	lncRNA	-	-
ENST00000753674.1	LINC02028-335	670	No protein	-	lncRNA	-	-
ENST00000753639.1	LINC02028-300	666	No protein	-	lncRNA	-	-
ENST00000753648.1	LINC02028-309	663	No protein	-	lncRNA	-	-
ENST00000753670.1	LINC02028-331	662	No protein	-	lncRNA	-	-
ENST00000443776.6	LINC02028-203	649	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000599441.5	LINC02028-212	648	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000753610.1	LINC02028-271	648	No protein	-	lncRNA	-	-
ENST00000661206.1	LINC02028-244	647	No protein	-	lncRNA	-	-
ENST00000753599.1	LINC02028-260	641	No protein	-	lncRNA	-	-
ENST00000753660.1	LINC02028-321	641	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000753669.1	LINC02028-330	624	No protein	-	lncRNA	-	-
ENST00000753665.1	LINC02028-326	621	No protein	-	lncRNA	-	-
ENST00000629795.2	LINC02028-229	618	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000753631.1	LINC02028-292	617	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000753645.1	LINC02028-306	616	No protein	-	lncRNA	-	-
ENST00000753604.1	LINC02028-265	609	No protein	-	lncRNA	-	-
ENST00000753676.1	LINC02028-337	596	No protein	-	lncRNA	-	-
ENST00000753627.1	LINC02028-288	591	No protein	-	lncRNA	-	-
ENST00000753644.1	LINC02028-305	585	No protein	-	lncRNA	-	-
ENST00000599153.1	LINC02028-211	580	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000753672.1	LINC02028-333	573	No protein	-	lncRNA	-	-
ENST00000753629.1	LINC02028-290	572	No protein	-	lncRNA	-	-
ENST00000753643.1	LINC02028-304	564	No protein	-	lncRNA	-	-
ENST00000753638.1	LINC02028-299	562	No protein	-	lncRNA	-	-
ENST00000753664.1	LINC02028-325	547	No protein	-	lncRNA	-	-
ENST00000420947.3	LINC02028-201	528	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000753628.1	LINC02028-289	517	No protein	-	lncRNA	-	-
ENST00000753612.1	LINC02028-273	493	No protein	-	lncRNA	-	-
ENST00000753662.1	LINC02028-323	493	No protein	-	lncRNA	-	-
ENST00000753640.1	LINC02028-301	487	No protein	-	lncRNA	-	-
ENST00000753641.1	LINC02028-302	482	No protein	-	lncRNA	-	-
ENST00000620876.4	LINC02028-220	476	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000753661.1	LINC02028-322	474	No protein	-	lncRNA	-	-
ENST00000753654.1	LINC02028-315	464	No protein	-	lncRNA	-	-
ENST00000610423.4	LINC02028-219	461	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000753630.1	LINC02028-291	454	No protein	-	lncRNA	-	-
ENST00000625879.2	LINC02028-224	421	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000630262.2	LINC02028-230	336	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000630484.2	LINC02028-231	322	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000629693.1	LINC02028-228	321	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000753679.1	LINC02028-340	289	No protein	-	lncRNA	-	-
ENST00000627909.2	LINC02028-227	276	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 828 bps,

Transcript Support Level (TSL)

TSL:5

Version

ENST00000597974.6

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Annotation Attributes

RNA-Seq supported only [Definitions]

Transcript: ENST00000597974.6 LINC02028-209

Summary

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Transcript: ENST00000597974.6 LINC02028-209

Summary

About Us

Get help

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