Transcript: ENST00000586855.7 ZSCAN5B-201

Description

zinc finger and SCAN domain containing 5B [Source:HGNC Symbol;Acc:HGNC:34246]

Gene Synonyms

ZNF371, ZNF495B

Location

Chromosome 19: 56,189,686-56,197,783 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 43 domains and features, is associated with 4879 variant alleles and maps to 344 oligo probes.

Gene

This transcript is a product of gene ENSG00000197213.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000586855.7	ZSCAN5B-201	1806	495aa	ENSP00000466072.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46203	A6NJL1	NM_001080456.5	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000589938.5	ZSCAN5B-203	570	169aa	ENSP00000465118.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EJD1	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000587032.2	ZSCAN5B-202	555	137aa	ENSP00000468660.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7ESD3	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 1,806 bps, Translation length: 495 residues

MANE

This MANE Select transcript contains ENSP00000466072 and matches to NM_001080456.5 and NP_001073925.2

Uniprot

This transcript corresponds to the following Uniprot identifiers: A6NJL1

CCDS

This transcript is a member of the Human CCDS set: CCDS46203

Transcript Support Level (TSL)

TSL:5

Version

ENST00000586855.7

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000586855.7 ZSCAN5B-201

Summary

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Transcript: ENST00000586855.7 ZSCAN5B-201

Summary

About Us

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