long intergenic non-protein coding RNA 1409 [Source:HGNC Symbol;Acc:HGNC:50701]
Chromosome 1: 778,855-784,759 forward strand.
This transcript has 2 exons and maps to 373 oligo probes.
This transcript is a product of gene ENSG00000237491.11 Show transcript tableHide transcript table
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | RefSeq Match | Flags |
|---|---|---|---|---|---|---|---|---|
| ENST00000412115.2 | LINC01409-201 | 1358 | No protein | - | lncRNA | - | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, | |
| ENST00000667728.2 | LINC01409-230 | 3247 | No protein | - | lncRNA | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000655384.1 | LINC01409-222 | 2192 | No protein | - | lncRNA | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000591702.1 | LINC01409-217 | 1873 | No protein | - | lncRNA | - | TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA, | |
| ENST00000655765.1 | LINC01409-223 | 1869 | No protein | - | lncRNA | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000443772.2 | LINC01409-204 | 1775 | No protein | - | lncRNA | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, | |
| ENST00000744211.1 | LINC01409-246 | 1636 | No protein | - | lncRNA | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000586928.6 | LINC01409-210 | 1480 | No protein | - | lncRNA | - | TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, | |
| ENST00000670700.1 | LINC01409-232 | 1378 | No protein | - | lncRNA | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000665719.1 | LINC01409-227 | 1291 | No protein | - | lncRNA | - | - | |
| ENST00000744203.1 | LINC01409-238 | 1279 | No protein | - | lncRNA | - | - | |
| ENST00000658648.1 | LINC01409-226 | 1214 | No protein | - | lncRNA | - | - | |
| ENST00000429505.6 | LINC01409-202 | 1201 | No protein | - | lncRNA | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, | |
| ENST00000657896.2 | LINC01409-225 | 1188 | No protein | - | lncRNA | - | - | |
| ENST00000744205.1 | LINC01409-240 | 1180 | No protein | - | lncRNA | - | - | |
| ENST00000666217.1 | LINC01409-229 | 1176 | No protein | - | lncRNA | - | - | |
| ENST00000744209.1 | LINC01409-244 | 1172 | No protein | - | lncRNA | - | - | |
| ENST00000656571.1 | LINC01409-224 | 1167 | No protein | - | lncRNA | - | - | |
| ENST00000744199.1 | LINC01409-234 | 1167 | No protein | - | lncRNA | - | - | |
| ENST00000744200.1 | LINC01409-235 | 1165 | No protein | - | lncRNA | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000651411.1 | LINC01409-221 | 1146 | No protein | - | lncRNA | - | - | |
| ENST00000669749.2 | LINC01409-231 | 1140 | No protein | - | lncRNA | - | - | |
| ENST00000744204.1 | LINC01409-239 | 1093 | No protein | - | lncRNA | - | - | |
| ENST00000744207.1 | LINC01409-242 | 1085 | No protein | - | lncRNA | - | - | |
| ENST00000665867.2 | LINC01409-228 | 1082 | No protein | - | lncRNA | - | - | |
| ENST00000744202.1 | LINC01409-237 | 1066 | No protein | - | lncRNA | - | - | |
| ENST00000744210.1 | LINC01409-245 | 1058 | No protein | - | lncRNA | - | - | |
| ENST00000744206.1 | LINC01409-241 | 1052 | No protein | - | lncRNA | - | - | |
| ENST00000586288.1 | LINC01409-209 | 1040 | No protein | - | lncRNA | - | TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, | |
| ENST00000587530.5 | LINC01409-211 | 1024 | No protein | - | lncRNA | - | TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, | |
| ENST00000744198.1 | LINC01409-233 | 1021 | No protein | - | lncRNA | - | - | |
| ENST00000744208.1 | LINC01409-243 | 876 | No protein | - | lncRNA | - | - | |
| ENST00000434264.6 | LINC01409-203 | 844 | No protein | - | lncRNA | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, | |
| ENST00000589899.5 | LINC01409-214 | 809 | No protein | - | lncRNA | - | TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, | |
| ENST00000744201.1 | LINC01409-236 | 795 | No protein | - | lncRNA | - | - | |
| ENST00000591440.5 | LINC01409-216 | 780 | No protein | - | lncRNA | - | TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, | |
| ENST00000590848.5 | LINC01409-215 | 726 | No protein | - | lncRNA | - | TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, | |
| ENST00000589531.5 | LINC01409-213 | 714 | No protein | - | lncRNA | - | TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, | |
| ENST00000593022.5 | LINC01409-219 | 693 | No protein | - | lncRNA | - | TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, | |
| ENST00000609830.1 | LINC01409-220 | 669 | No protein | - | lncRNA | - | TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, | |
| ENST00000585826.2 | LINC01409-208 | 628 | No protein | - | lncRNA | - | TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA, | |
| ENST00000457084.2 | LINC01409-205 | 619 | No protein | - | lncRNA | - | TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4, | |
| ENST00000592547.1 | LINC01409-218 | 608 | No protein | - | lncRNA | - | TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA, | |
| ENST00000588951.5 | LINC01409-212 | 607 | No protein | - | lncRNA | - | TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, | |
| ENST00000585768.5 | LINC01409-207 | 394 | No protein | - | lncRNA | - | TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, | |
| ENST00000585745.5 | LINC01409-206 | 168 | No protein | - | lncRNA | - | TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, |