Transcript: ENST00000581910.6 TMEM220-AS1-204

Description

TMEM220 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:44357]

Location

Chromosome 17: 10,844,711-10,880,895 forward strand.

About this transcript

This transcript has 4 exons and maps to 89 oligo probes.

Gene

This transcript is a product of gene ENSG00000263400.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000742812.1	TMEM220-AS1-213	1277	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000579114.6	TMEM220-AS1-201	1633	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000743031.1	TMEM220-AS1-235	1632	No protein	-	lncRNA	-	-
ENST00000743035.1	TMEM220-AS1-239	1595	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000743033.1	TMEM220-AS1-237	1458	No protein	-	lncRNA	-	-
ENST00000743032.1	TMEM220-AS1-236	1444	No protein	-	lncRNA	-	-
ENST00000664973.1	TMEM220-AS1-212	1387	No protein	-	lncRNA	-	-
ENST00000645807.2	TMEM220-AS1-210	1055	No protein	-	lncRNA	-	-
ENST00000743271.1	TMEM220-AS1-246	1041	No protein	-	lncRNA	-	-
ENST00000647474.1	TMEM220-AS1-211	1001	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000742813.1	TMEM220-AS1-214	949	No protein	-	lncRNA	-	-
ENST00000583343.6	TMEM220-AS1-207	944	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000581910.6	TMEM220-AS1-204	904	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000743270.1	TMEM220-AS1-245	899	No protein	-	lncRNA	-	-
ENST00000742820.1	TMEM220-AS1-221	876	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000742822.1	TMEM220-AS1-223	858	No protein	-	lncRNA	-	-
ENST00000743272.1	TMEM220-AS1-247	838	No protein	-	lncRNA	-	-
ENST00000742826.1	TMEM220-AS1-227	831	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000742815.1	TMEM220-AS1-216	789	No protein	-	lncRNA	-	-
ENST00000743036.1	TMEM220-AS1-240	775	No protein	-	lncRNA	-	-
ENST00000742814.1	TMEM220-AS1-215	770	No protein	-	lncRNA	-	-
ENST00000743269.1	TMEM220-AS1-244	762	No protein	-	lncRNA	-	-
ENST00000585243.1	TMEM220-AS1-209	756	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000743037.1	TMEM220-AS1-241	747	No protein	-	lncRNA	-	-
ENST00000742816.1	TMEM220-AS1-217	738	No protein	-	lncRNA	-	-
ENST00000742817.1	TMEM220-AS1-218	725	No protein	-	lncRNA	-	-
ENST00000742830.1	TMEM220-AS1-231	706	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000742823.1	TMEM220-AS1-224	691	No protein	-	lncRNA	-	-
ENST00000743274.1	TMEM220-AS1-249	684	No protein	-	lncRNA	-	-
ENST00000743275.1	TMEM220-AS1-250	669	No protein	-	lncRNA	-	-
ENST00000743030.1	TMEM220-AS1-234	663	No protein	-	lncRNA	-	-
ENST00000742825.1	TMEM220-AS1-226	660	No protein	-	lncRNA	-	-
ENST00000742831.1	TMEM220-AS1-232	648	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000742824.1	TMEM220-AS1-225	623	No protein	-	lncRNA	-	-
ENST00000583012.1	TMEM220-AS1-205	609	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000742818.1	TMEM220-AS1-219	601	No protein	-	lncRNA	-	-
ENST00000742827.1	TMEM220-AS1-228	591	No protein	-	lncRNA	-	-
ENST00000581366.6	TMEM220-AS1-203	589	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000580899.1	TMEM220-AS1-202	561	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000743034.1	TMEM220-AS1-238	559	No protein	-	lncRNA	-	-
ENST00000742829.1	TMEM220-AS1-230	552	No protein	-	lncRNA	-	-
ENST00000743039.1	TMEM220-AS1-243	546	No protein	-	lncRNA	-	-
ENST00000584714.5	TMEM220-AS1-208	541	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000583115.5	TMEM220-AS1-206	521	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000742819.1	TMEM220-AS1-220	494	No protein	-	lncRNA	-	-
ENST00000743038.1	TMEM220-AS1-242	475	No protein	-	lncRNA	-	-
ENST00000742821.1	TMEM220-AS1-222	459	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000743273.1	TMEM220-AS1-248	441	No protein	-	lncRNA	-	-
ENST00000742828.1	TMEM220-AS1-229	407	No protein	-	lncRNA	-	-
ENST00000742832.1	TMEM220-AS1-233	274	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 904 bps,

Transcript Support Level (TSL)

TSL:5

Version

ENST00000581910.6

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000581910.6 TMEM220-AS1-204

Summary

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Transcript: ENST00000581910.6 TMEM220-AS1-204

Summary

About Us

Get help

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