Transcript: ENST00000578492.5 ARHGAP27P1-BPTFP1-KPNA2P3-201

Description

ARHGAP27P1-BPTFP1-KPNA2P3 readthrough, transcribed pseudogene [Source:HGNC Symbol;Acc:HGNC:52873]

Location

Chromosome 17: 64,749,663-64,781,626 reverse strand.

About this transcript

This transcript has 12 exons, is associated with 13365 variant alleles and maps to 793 oligo probes.

Gene

This transcript is a product of gene ENSG00000215769.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000578492.5	ARHGAP27P1-BPTFP1-KPNA2P3-201	2732	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000717267.1	ARHGAP27P1-BPTFP1-KPNA2P3-204	3760	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000717266.1	ARHGAP27P1-BPTFP1-KPNA2P3-203	3289	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000579125.1	ARHGAP27P1-BPTFP1-KPNA2P3-202	1318	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 12, Coding exons: 0, Transcript length: 2,732 bps,

Transcript Support Level (TSL)

TSL:2

Version

ENST00000578492.5

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

overlaps pseudogene [Definitions]

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENST00000578492.5 ARHGAP27P1-BPTFP1-KPNA2P3-201

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Transcript: ENST00000578492.5 ARHGAP27P1-BPTFP1-KPNA2P3-201

Summary

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