Transcript: ENST00000573100.2 SMIM28-201

Description

small integral membrane protein 28 [Source:HGNC Symbol;Acc:HGNC:53434]

Location

Chromosome 6: 138,377,905-138,383,486 forward strand.

About this transcript

This transcript has 2 exons, is annotated with 4 domains and features, is associated with 2358 variant alleles and maps to 111 oligo probes.

Gene

This transcript is a product of gene ENSG00000262543.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000573100.2	SMIM28-201	1266	152aa	ENSP00000489939.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS94012	A0A1B0GU29	NM_001368163.3	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 1,266 bps, Translation length: 152 residues

MANE

This MANE Select transcript contains ENSP00000489939 and matches to NM_001368163.3 and NP_001355092.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: A0A1B0GU29

CCDS

This transcript is a member of the Human CCDS set: CCDS94012

Transcript Support Level (TSL)

TSL:5

Version

ENST00000573100.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

non-submitted evidence [Definitions]

RNA-Seq supported only

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000573100.2 SMIM28-201

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Transcript: ENST00000573100.2 SMIM28-201

Summary

About Us

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