Transcript: ENST00000571901.5

Description

novel transcript

Location

Chromosome 17: 46,998,700-47,067,469 reverse strand.

About this transcript

This transcript has 6 exons and maps to 410 oligo probes.

Gene

This transcript is a product of gene ENSG00000262879.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000570379.1	-	622	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000722913.1	-	601	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000658121.1	-	8712	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000573341.6	-	5940	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000653193.2	-	2982	No protein	-	lncRNA	-	-
ENST00000663210.2	-	2932	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000662706.2	-	2149	No protein	-	lncRNA	-	-
ENST00000722936.1	-	1959	No protein	-	lncRNA	-	-
ENST00000722972.1	-	1843	No protein	-	lncRNA	-	-
ENST00000722951.1	-	1784	No protein	-	lncRNA	-	-
ENST00000722925.1	-	1716	No protein	-	lncRNA	-	-
ENST00000668766.2	-	1708	No protein	-	lncRNA	-	-
ENST00000669500.1	-	1658	No protein	-	lncRNA	-	-
ENST00000722974.1	-	1640	No protein	-	lncRNA	-	-
ENST00000722941.1	-	1609	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000661492.2	-	1601	No protein	-	lncRNA	-	-
ENST00000722920.1	-	1565	No protein	-	lncRNA	-	-
ENST00000722955.1	-	1524	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000666536.2	-	1512	No protein	-	lncRNA	-	-
ENST00000670688.1	-	1451	No protein	-	lncRNA	-	-
ENST00000653065.1	-	1447	No protein	-	lncRNA	-	-
ENST00000668245.1	-	1432	No protein	-	lncRNA	-	-
ENST00000722953.1	-	1419	No protein	-	lncRNA	-	-
ENST00000722942.1	-	1418	No protein	-	lncRNA	-	-
ENST00000660448.1	-	1415	No protein	-	lncRNA	-	-
ENST00000655133.1	-	1411	No protein	-	lncRNA	-	-
ENST00000722927.1	-	1398	No protein	-	lncRNA	-	-
ENST00000655083.1	-	1393	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000722962.1	-	1391	No protein	-	lncRNA	-	-
ENST00000722954.1	-	1374	No protein	-	lncRNA	-	-
ENST00000722973.1	-	1365	No protein	-	lncRNA	-	-
ENST00000722940.1	-	1364	No protein	-	lncRNA	-	-
ENST00000575173.3	-	1361	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000574741.2	-	1356	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000722919.1	-	1335	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000722922.1	-	1332	No protein	-	lncRNA	-	-
ENST00000722933.1	-	1318	No protein	-	lncRNA	-	-
ENST00000659775.1	-	1314	No protein	-	lncRNA	-	-
ENST00000722935.1	-	1300	No protein	-	lncRNA	-	-
ENST00000571143.2	-	1290	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000656035.1	-	1275	No protein	-	lncRNA	-	-
ENST00000663847.1	-	1239	No protein	-	lncRNA	-	-
ENST00000722934.1	-	1218	No protein	-	lncRNA	-	-
ENST00000722917.1	-	1200	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000663416.1	-	1192	No protein	-	lncRNA	-	-
ENST00000722918.1	-	1176	No protein	-	lncRNA	-	-
ENST00000667718.2	-	1173	No protein	-	lncRNA	-	-
ENST00000722916.1	-	1173	No protein	-	lncRNA	-	-
ENST00000722970.1	-	1165	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000701807.1	-	1155	No protein	-	lncRNA	-	-
ENST00000668604.2	-	1148	No protein	-	lncRNA	-	-
ENST00000722947.1	-	1097	No protein	-	lncRNA	-	-
ENST00000722926.1	-	1093	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000722971.1	-	1065	No protein	-	lncRNA	-	-
ENST00000722957.1	-	1059	No protein	-	lncRNA	-	-
ENST00000722944.1	-	1052	No protein	-	lncRNA	-	-
ENST00000722923.1	-	1047	No protein	-	lncRNA	-	-
ENST00000722980.1	-	1047	No protein	-	lncRNA	-	-
ENST00000722945.1	-	1044	No protein	-	lncRNA	-	-
ENST00000722948.1	-	1023	No protein	-	lncRNA	-	-
ENST00000722915.1	-	1010	No protein	-	lncRNA	-	-
ENST00000722921.1	-	1006	No protein	-	lncRNA	-	-
ENST00000722943.1	-	999	No protein	-	lncRNA	-	-
ENST00000722924.1	-	985	No protein	-	lncRNA	-	-
ENST00000722949.1	-	980	No protein	-	lncRNA	-	-
ENST00000660600.2	-	979	No protein	-	lncRNA	-	-
ENST00000722946.1	-	947	No protein	-	lncRNA	-	-
ENST00000722937.1	-	944	No protein	-	lncRNA	-	-
ENST00000660267.2	-	920	No protein	-	lncRNA	-	-
ENST00000722914.1	-	917	No protein	-	lncRNA	-	-
ENST00000722964.1	-	913	No protein	-	lncRNA	-	-
ENST00000722978.1	-	882	No protein	-	lncRNA	-	-
ENST00000722928.1	-	877	No protein	-	lncRNA	-	-
ENST00000722929.1	-	872	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000570314.3	-	862	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000722939.1	-	838	No protein	-	lncRNA	-	-
ENST00000722938.1	-	836	No protein	-	lncRNA	-	-
ENST00000722960.1	-	809	No protein	-	lncRNA	-	-
ENST00000571901.5	-	808	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000722931.1	-	802	No protein	-	lncRNA	-	-
ENST00000722968.1	-	771	No protein	-	lncRNA	-	-
ENST00000722982.1	-	763	No protein	-	lncRNA	-	-
ENST00000722930.1	-	762	No protein	-	lncRNA	-	-
ENST00000722983.1	-	723	No protein	-	lncRNA	-	-
ENST00000722967.1	-	714	No protein	-	lncRNA	-	-
ENST00000722965.1	-	712	No protein	-	lncRNA	-	-
ENST00000722977.1	-	701	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000722963.1	-	692	No protein	-	lncRNA	-	-
ENST00000575930.5	-	685	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000722975.1	-	673	No protein	-	lncRNA	-	-
ENST00000722969.1	-	672	No protein	-	lncRNA	-	-
ENST00000722979.1	-	655	No protein	-	lncRNA	-	-
ENST00000722932.1	-	643	No protein	-	lncRNA	-	-
ENST00000670987.1	-	633	No protein	-	lncRNA	-	-
ENST00000722959.1	-	597	No protein	-	lncRNA	-	-
ENST00000722966.1	-	594	No protein	-	lncRNA	-	-
ENST00000722976.1	-	590	No protein	-	lncRNA	-	-
ENST00000722956.1	-	542	No protein	-	lncRNA	-	-
ENST00000722958.1	-	510	No protein	-	lncRNA	-	-
ENST00000722950.1	-	507	No protein	-	lncRNA	-	-
ENST00000722981.1	-	482	No protein	-	lncRNA	-	-
ENST00000576938.2	-	409	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000572864.6	-	375	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000701385.2	-	343	No protein	-	lncRNA	-	-
ENST00000722961.1	-	304	No protein	-	lncRNA	-	-
ENST00000722952.1	-	303	No protein	-	lncRNA	-	-
ENST00000571665.1	-	255	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,

Summary

Statistics

Exons: 6, Coding exons: 0, Transcript length: 808 bps,

Transcript Support Level (TSL)

TSL:3

Version

ENST00000571901.5

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENST00000571901.5

Summary

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Transcript: ENST00000571901.5

Summary

About Us

Get help

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