Transcript: ENST00000571259.6 BCAR4-202

Description

breast cancer anti-estrogen resistance 4 [Source:HGNC Symbol;Acc:HGNC:22170]

Location

Chromosome 16: 11,819,821-11,828,959 reverse strand.

About this transcript

This transcript has 3 exons and maps to 197 oligo probes.

Gene

This transcript is a product of gene ENSG00000262117.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000725304.1	BCAR4-209	758	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000725328.1	BCAR4-233	1309	No protein	-	lncRNA	-	-
ENST00000573319.1	BCAR4-204	1273	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000725326.1	BCAR4-231	1192	No protein	-	lncRNA	-	-
ENST00000725311.1	BCAR4-216	1131	No protein	-	lncRNA	-	-
ENST00000725319.1	BCAR4-224	1123	No protein	-	lncRNA	-	-
ENST00000615574.2	BCAR4-207	1106	No protein	-	lncRNA	-	TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENST00000725320.1	BCAR4-225	1023	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000725325.1	BCAR4-230	1003	No protein	-	lncRNA	-	-
ENST00000573037.2	BCAR4-203	989	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000725321.1	BCAR4-226	934	No protein	-	lncRNA	-	-
ENST00000725323.1	BCAR4-228	932	No protein	-	lncRNA	-	-
ENST00000725312.1	BCAR4-217	902	No protein	-	lncRNA	-	-
ENST00000725307.1	BCAR4-212	898	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000725329.1	BCAR4-234	876	No protein	-	lncRNA	-	-
ENST00000725330.1	BCAR4-235	861	No protein	-	lncRNA	-	-
ENST00000571158.6	BCAR4-201	826	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000725314.1	BCAR4-219	823	No protein	-	lncRNA	-	-
ENST00000725316.1	BCAR4-221	823	No protein	-	lncRNA	-	-
ENST00000725318.1	BCAR4-223	817	No protein	-	lncRNA	-	-
ENST00000725322.1	BCAR4-227	809	No protein	-	lncRNA	-	-
ENST00000571259.6	BCAR4-202	808	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000725306.1	BCAR4-211	777	No protein	-	lncRNA	-	-
ENST00000577041.2	BCAR4-206	770	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000725324.1	BCAR4-229	762	No protein	-	lncRNA	-	-
ENST00000574028.2	BCAR4-205	756	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000725309.1	BCAR4-214	740	No protein	-	lncRNA	-	-
ENST00000725310.1	BCAR4-215	738	No protein	-	lncRNA	-	-
ENST00000725335.1	BCAR4-240	737	No protein	-	lncRNA	-	-
ENST00000725313.1	BCAR4-218	735	No protein	-	lncRNA	-	-
ENST00000725305.1	BCAR4-210	682	No protein	-	lncRNA	-	-
ENST00000725308.1	BCAR4-213	670	No protein	-	lncRNA	-	-
ENST00000725317.1	BCAR4-222	641	No protein	-	lncRNA	-	-
ENST00000725315.1	BCAR4-220	574	No protein	-	lncRNA	-	-
ENST00000725331.1	BCAR4-236	535	No protein	-	lncRNA	-	-
ENST00000725327.1	BCAR4-232	519	No protein	-	lncRNA	-	-
ENST00000725332.1	BCAR4-237	488	No protein	-	lncRNA	-	-
ENST00000725334.1	BCAR4-239	465	No protein	-	lncRNA	-	-
ENST00000725303.1	BCAR4-208	455	No protein	-	lncRNA	-	-
ENST00000725333.1	BCAR4-238	415	No protein	-	lncRNA	-	-
ENST00000725336.1	BCAR4-241	259	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 808 bps,

Transcript Support Level (TSL)

TSL:2

Version

ENST00000571259.6

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000571259.6 BCAR4-202

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Transcript: ENST00000571259.6 BCAR4-202

Summary

About Us

Get help

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