Transcript: ENST00000570035.5 LINC01572-204

Description

long intergenic non-protein coding RNA 1572 [Source:HGNC Symbol;Acc:HGNC:51385]

Location

Chromosome 16: 72,522,138-72,665,009 reverse strand.

About this transcript

This transcript has 5 exons and maps to 107 oligo probes.

Gene

This transcript is a product of gene ENSG00000261008.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000624829.4	LINC01572-206	2759	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000664779.1	LINC01572-215	3298	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000653104.1	LINC01572-207	3130	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000766039.1	LINC01572-237	2468	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000766105.1	LINC01572-303	2361	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000656218.1	LINC01572-209	2280	No protein	-	lncRNA	-	-
ENST00000666555.2	LINC01572-216	2236	No protein	-	lncRNA	-	-
ENST00000561611.2	LINC01572-201	2194	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000766042.1	LINC01572-240	2164	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000766023.1	LINC01572-221	2015	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000662171.1	LINC01572-213	1997	No protein	-	lncRNA	-	-
ENST00000659470.1	LINC01572-211	1984	No protein	-	lncRNA	-	-
ENST00000766104.1	LINC01572-302	1961	No protein	-	lncRNA	-	-
ENST00000766055.1	LINC01572-253	1914	No protein	-	lncRNA	-	-
ENST00000766062.1	LINC01572-260	1797	No protein	-	lncRNA	-	-
ENST00000766070.1	LINC01572-268	1730	No protein	-	lncRNA	-	-
ENST00000657725.1	LINC01572-210	1678	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000664155.1	LINC01572-214	1654	No protein	-	lncRNA	-	-
ENST00000766030.1	LINC01572-228	1569	No protein	-	lncRNA	-	-
ENST00000766027.1	LINC01572-225	1545	No protein	-	lncRNA	-	-
ENST00000766029.1	LINC01572-227	1525	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000766028.1	LINC01572-226	1439	No protein	-	lncRNA	-	-
ENST00000766050.1	LINC01572-248	1345	No protein	-	lncRNA	-	-
ENST00000766040.1	LINC01572-238	1328	No protein	-	lncRNA	-	-
ENST00000766084.1	LINC01572-282	1323	No protein	-	lncRNA	-	-
ENST00000766093.1	LINC01572-291	1302	No protein	-	lncRNA	-	-
ENST00000766044.1	LINC01572-242	1258	No protein	-	lncRNA	-	-
ENST00000766082.1	LINC01572-280	1228	No protein	-	lncRNA	-	-
ENST00000766048.1	LINC01572-246	1226	No protein	-	lncRNA	-	-
ENST00000766100.1	LINC01572-298	1218	No protein	-	lncRNA	-	-
ENST00000701925.2	LINC01572-220	1214	No protein	-	lncRNA	-	-
ENST00000766052.1	LINC01572-250	1180	No protein	-	lncRNA	-	-
ENST00000766034.1	LINC01572-232	1179	No protein	-	lncRNA	-	-
ENST00000766024.1	LINC01572-222	1160	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000766046.1	LINC01572-244	1117	No protein	-	lncRNA	-	-
ENST00000766036.1	LINC01572-234	1112	No protein	-	lncRNA	-	-
ENST00000766086.1	LINC01572-284	1072	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000766113.1	LINC01572-311	1072	No protein	-	lncRNA	-	-
ENST00000766032.1	LINC01572-230	1063	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000766041.1	LINC01572-239	1055	No protein	-	lncRNA	-	-
ENST00000766111.1	LINC01572-309	1055	No protein	-	lncRNA	-	-
ENST00000766096.1	LINC01572-294	1032	No protein	-	lncRNA	-	-
ENST00000766088.1	LINC01572-286	1026	No protein	-	lncRNA	-	-
ENST00000766035.1	LINC01572-233	1018	No protein	-	lncRNA	-	-
ENST00000766037.1	LINC01572-235	1018	No protein	-	lncRNA	-	-
ENST00000766038.1	LINC01572-236	990	No protein	-	lncRNA	-	-
ENST00000766033.1	LINC01572-231	944	No protein	-	lncRNA	-	-
ENST00000766076.1	LINC01572-274	939	No protein	-	lncRNA	-	-
ENST00000570152.2	LINC01572-205	903	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000766061.1	LINC01572-259	883	No protein	-	lncRNA	-	-
ENST00000766026.1	LINC01572-224	882	No protein	-	lncRNA	-	-
ENST00000766025.1	LINC01572-223	873	No protein	-	lncRNA	-	-
ENST00000766080.1	LINC01572-278	870	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000669279.1	LINC01572-218	865	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000570035.5	LINC01572-204	831	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000766089.1	LINC01572-287	831	No protein	-	lncRNA	-	-
ENST00000766031.1	LINC01572-229	829	No protein	-	lncRNA	-	-
ENST00000668081.1	LINC01572-217	812	No protein	-	lncRNA	-	-
ENST00000766092.1	LINC01572-290	811	No protein	-	lncRNA	-	-
ENST00000766075.1	LINC01572-273	804	No protein	-	lncRNA	-	-
ENST00000766058.1	LINC01572-256	796	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000766045.1	LINC01572-243	779	No protein	-	lncRNA	-	-
ENST00000766091.1	LINC01572-289	779	No protein	-	lncRNA	-	-
ENST00000766043.1	LINC01572-241	772	No protein	-	lncRNA	-	-
ENST00000766059.1	LINC01572-257	758	No protein	-	lncRNA	-	-
ENST00000766109.1	LINC01572-307	749	No protein	-	lncRNA	-	-
ENST00000766051.1	LINC01572-249	747	No protein	-	lncRNA	-	-
ENST00000766081.1	LINC01572-279	747	No protein	-	lncRNA	-	-
ENST00000661899.1	LINC01572-212	723	No protein	-	lncRNA	-	-
ENST00000766056.1	LINC01572-254	720	No protein	-	lncRNA	-	-
ENST00000766083.1	LINC01572-281	712	No protein	-	lncRNA	-	-
ENST00000766087.1	LINC01572-285	690	No protein	-	lncRNA	-	-
ENST00000766053.1	LINC01572-251	684	No protein	-	lncRNA	-	-
ENST00000766054.1	LINC01572-252	668	No protein	-	lncRNA	-	-
ENST00000766090.1	LINC01572-288	665	No protein	-	lncRNA	-	-
ENST00000766047.1	LINC01572-245	664	No protein	-	lncRNA	-	-
ENST00000766077.1	LINC01572-275	650	No protein	-	lncRNA	-	-
ENST00000766063.1	LINC01572-261	639	No protein	-	lncRNA	-	-
ENST00000766078.1	LINC01572-276	638	No protein	-	lncRNA	-	-
ENST00000766060.1	LINC01572-258	637	No protein	-	lncRNA	-	-
ENST00000766085.1	LINC01572-283	637	No protein	-	lncRNA	-	-
ENST00000766098.1	LINC01572-296	631	No protein	-	lncRNA	-	-
ENST00000766097.1	LINC01572-295	615	No protein	-	lncRNA	-	-
ENST00000766049.1	LINC01572-247	605	No protein	-	lncRNA	-	-
ENST00000766072.1	LINC01572-270	595	No protein	-	lncRNA	-	-
ENST00000766099.1	LINC01572-297	589	No protein	-	lncRNA	-	-
ENST00000766064.1	LINC01572-262	582	No protein	-	lncRNA	-	-
ENST00000766065.1	LINC01572-263	580	No protein	-	lncRNA	-	-
ENST00000766071.1	LINC01572-269	577	No protein	-	lncRNA	-	-
ENST00000563770.5	LINC01572-202	568	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000766074.1	LINC01572-272	566	No protein	-	lncRNA	-	-
ENST00000563823.6	LINC01572-203	563	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000766067.1	LINC01572-265	547	No protein	-	lncRNA	-	-
ENST00000766069.1	LINC01572-267	540	No protein	-	lncRNA	-	-
ENST00000766057.1	LINC01572-255	537	No protein	-	lncRNA	-	-
ENST00000766068.1	LINC01572-266	534	No protein	-	lncRNA	-	-
ENST00000766107.1	LINC01572-305	527	No protein	-	lncRNA	-	-
ENST00000766108.1	LINC01572-306	516	No protein	-	lncRNA	-	-
ENST00000766102.1	LINC01572-300	511	No protein	-	lncRNA	-	-
ENST00000766073.1	LINC01572-271	496	No protein	-	lncRNA	-	-
ENST00000766066.1	LINC01572-264	487	No protein	-	lncRNA	-	-
ENST00000691892.2	LINC01572-219	486	No protein	-	lncRNA	-	-
ENST00000655530.2	LINC01572-208	472	No protein	-	lncRNA	-	-
ENST00000766110.1	LINC01572-308	469	No protein	-	lncRNA	-	-
ENST00000766101.1	LINC01572-299	465	No protein	-	lncRNA	-	-
ENST00000766114.1	LINC01572-312	453	No protein	-	lncRNA	-	-
ENST00000766106.1	LINC01572-304	423	No protein	-	lncRNA	-	-
ENST00000766103.1	LINC01572-301	388	No protein	-	lncRNA	-	-
ENST00000766094.1	LINC01572-292	364	No protein	-	lncRNA	-	-
ENST00000766095.1	LINC01572-293	348	No protein	-	lncRNA	-	-
ENST00000766079.1	LINC01572-277	305	No protein	-	lncRNA	-	-
ENST00000766112.1	LINC01572-310	243	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 831 bps,

Transcript Support Level (TSL)

TSL:3

Version

ENST00000570035.5

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENST00000570035.5 LINC01572-204

Summary

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Transcript: ENST00000570035.5 LINC01572-204

Summary

About Us

Get help

Our sister sites

Follow us