Transcript: ENST00000564875.2 SYNAGE-202

Description

synapse stability regulating cerebellar lncRNA [Source:HGNC Symbol;Acc:HGNC:56730]

Location

Chromosome 16: 49,287,399-49,290,477 forward strand.

About this transcript

This transcript has 4 exons and maps to 79 oligo probes.

Gene

This transcript is a product of gene ENSG00000279249.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000647485.1	SYNAGE-207	3340	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000664631.1	SYNAGE-254	6757	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000569877.3	SYNAGE-203	6694	No protein	-	lncRNA	-	TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENST00000654886.1	SYNAGE-216	5137	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000662365.1	SYNAGE-242	3943	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000667574.1	SYNAGE-265	3795	No protein	-	lncRNA	-	-
ENST00000663876.1	SYNAGE-248	3604	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000643467.1	SYNAGE-205	3326	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000655632.1	SYNAGE-220	3174	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000667121.1	SYNAGE-264	3172	No protein	-	lncRNA	-	-
ENST00000623424.2	SYNAGE-204	3123	No protein	-	lncRNA	-	TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENST00000654193.1	SYNAGE-213	3111	No protein	-	lncRNA	-	-
ENST00000662771.1	SYNAGE-244	3046	No protein	-	lncRNA	-	-
ENST00000656938.2	SYNAGE-224	3040	No protein	-	lncRNA	-	-
ENST00000659128.1	SYNAGE-229	3039	No protein	-	lncRNA	-	-
ENST00000662122.1	SYNAGE-240	3008	No protein	-	lncRNA	-	-
ENST00000655726.2	SYNAGE-221	2991	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000659070.1	SYNAGE-228	2981	No protein	-	lncRNA	-	-
ENST00000659733.1	SYNAGE-234	2944	No protein	-	lncRNA	-	-
ENST00000662939.1	SYNAGE-245	2928	No protein	-	lncRNA	-	-
ENST00000662260.1	SYNAGE-241	2928	No protein	-	lncRNA	-	-
ENST00000670604.1	SYNAGE-279	2884	No protein	-	lncRNA	-	-
ENST00000669545.1	SYNAGE-273	2871	No protein	-	lncRNA	-	-
ENST00000670027.1	SYNAGE-276	2815	No protein	-	lncRNA	-	-
ENST00000671642.1	SYNAGE-284	2802	No protein	-	lncRNA	-	-
ENST00000666248.1	SYNAGE-261	2792	No protein	-	lncRNA	-	-
ENST00000664562.1	SYNAGE-253	2762	No protein	-	lncRNA	-	-
ENST00000667110.1	SYNAGE-263	2716	No protein	-	lncRNA	-	-
ENST00000660791.1	SYNAGE-236	2702	No protein	-	lncRNA	-	-
ENST00000656220.1	SYNAGE-222	2473	No protein	-	lncRNA	-	-
ENST00000671113.1	SYNAGE-281	2446	No protein	-	lncRNA	-	-
ENST00000663277.1	SYNAGE-246	2436	No protein	-	lncRNA	-	-
ENST00000653520.1	SYNAGE-209	2231	No protein	-	lncRNA	-	-
ENST00000657569.1	SYNAGE-226	2157	No protein	-	lncRNA	-	-
ENST00000654738.1	SYNAGE-215	2133	No protein	-	lncRNA	-	-
ENST00000663746.1	SYNAGE-247	2039	No protein	-	lncRNA	-	-
ENST00000661277.1	SYNAGE-237	2029	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000668213.1	SYNAGE-267	1924	No protein	-	lncRNA	-	-
ENST00000653582.1	SYNAGE-210	1918	No protein	-	lncRNA	-	-
ENST00000665128.1	SYNAGE-257	1898	No protein	-	lncRNA	-	-
ENST00000663938.1	SYNAGE-249	1833	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000659313.1	SYNAGE-231	1821	No protein	-	lncRNA	-	-
ENST00000669496.1	SYNAGE-272	1806	No protein	-	lncRNA	-	-
ENST00000666113.1	SYNAGE-260	1804	No protein	-	lncRNA	-	-
ENST00000564048.2	SYNAGE-201	1749	No protein	-	lncRNA	-	TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENST00000659639.1	SYNAGE-233	1738	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000665785.1	SYNAGE-259	1734	No protein	-	lncRNA	-	-
ENST00000664655.1	SYNAGE-255	1724	No protein	-	lncRNA	-	-
ENST00000669637.1	SYNAGE-274	1620	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000656377.1	SYNAGE-223	1570	No protein	-	lncRNA	-	-
ENST00000654122.1	SYNAGE-212	1514	No protein	-	lncRNA	-	-
ENST00000664979.1	SYNAGE-256	1433	No protein	-	lncRNA	-	-
ENST00000661501.1	SYNAGE-238	1395	No protein	-	lncRNA	-	-
ENST00000647093.1	SYNAGE-206	1350	No protein	-	lncRNA	-	-
ENST00000701655.1	SYNAGE-285	1339	No protein	-	lncRNA	-	-
ENST00000664312.1	SYNAGE-251	1338	No protein	-	lncRNA	-	-
ENST00000664315.1	SYNAGE-252	1317	No protein	-	lncRNA	-	-
ENST00000731043.1	SYNAGE-287	1306	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000660181.1	SYNAGE-235	1278	No protein	-	lncRNA	-	-
ENST00000658470.2	SYNAGE-227	1274	No protein	-	lncRNA	-	-
ENST00000665277.1	SYNAGE-258	1266	No protein	-	lncRNA	-	-
ENST00000659529.1	SYNAGE-232	1252	No protein	-	lncRNA	-	-
ENST00000655576.1	SYNAGE-219	1229	No protein	-	lncRNA	-	-
ENST00000668965.1	SYNAGE-271	1210	No protein	-	lncRNA	-	-
ENST00000657271.1	SYNAGE-225	1191	No protein	-	lncRNA	-	-
ENST00000731044.1	SYNAGE-288	1183	No protein	-	lncRNA	-	-
ENST00000670205.1	SYNAGE-278	1153	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000670901.1	SYNAGE-280	1153	No protein	-	lncRNA	-	-
ENST00000671435.1	SYNAGE-282	1150	No protein	-	lncRNA	-	-
ENST00000654109.1	SYNAGE-211	1141	No protein	-	lncRNA	-	-
ENST00000668624.1	SYNAGE-269	1134	No protein	-	lncRNA	-	-
ENST00000662695.2	SYNAGE-243	1133	No protein	-	lncRNA	-	-
ENST00000668802.1	SYNAGE-270	1123	No protein	-	lncRNA	-	-
ENST00000670042.1	SYNAGE-277	1122	No protein	-	lncRNA	-	-
ENST00000731042.1	SYNAGE-286	1120	No protein	-	lncRNA	-	-
ENST00000664244.1	SYNAGE-250	1103	No protein	-	lncRNA	-	-
ENST00000669786.1	SYNAGE-275	1102	No protein	-	lncRNA	-	-
ENST00000666530.1	SYNAGE-262	1095	No protein	-	lncRNA	-	-
ENST00000659163.1	SYNAGE-230	1090	No protein	-	lncRNA	-	-
ENST00000654991.1	SYNAGE-217	1087	No protein	-	lncRNA	-	-
ENST00000655236.2	SYNAGE-218	1069	No protein	-	lncRNA	-	-
ENST00000564875.2	SYNAGE-202	1023	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000654606.1	SYNAGE-214	1016	No protein	-	lncRNA	-	-
ENST00000671636.1	SYNAGE-283	988	No protein	-	lncRNA	-	-
ENST00000653054.1	SYNAGE-208	988	No protein	-	lncRNA	-	-
ENST00000668453.1	SYNAGE-268	969	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000661880.1	SYNAGE-239	936	No protein	-	lncRNA	-	-
ENST00000667688.1	SYNAGE-266	714	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000731045.1	SYNAGE-289	713	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 1,023 bps,

Transcript Support Level (TSL)

TSL:3

Version

ENST00000564875.2

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000564875.2 SYNAGE-202

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Transcript: ENST00000564875.2 SYNAGE-202

Summary

About Us

Get help

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