Transcript: ENST00000564830.3 LINC01615-203

Description

long intergenic non-protein coding RNA 1615 [Source:HGNC Symbol;Acc:HGNC:51898]

Location

Chromosome 6: 169,175,277-169,182,841 reverse strand.

About this transcript

This transcript has 3 exons and maps to 148 oligo probes.

Gene

This transcript is a product of gene ENSG00000223485.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000831997.1	LINC01615-208	1430	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000634877.2	LINC01615-204	1769	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000657431.4	LINC01615-206	1725	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000832007.1	LINC01615-218	1686	No protein	-	lncRNA	-	-
ENST00000651190.1	LINC01615-205	1633	No protein	-	lncRNA	-	-
ENST00000832006.1	LINC01615-217	1586	No protein	-	lncRNA	-	-
ENST00000832014.1	LINC01615-225	1584	No protein	-	lncRNA	-	-
ENST00000832003.1	LINC01615-214	1050	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000832004.1	LINC01615-215	1011	No protein	-	lncRNA	-	-
ENST00000832012.1	LINC01615-223	927	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000832001.1	LINC01615-212	897	No protein	-	lncRNA	-	-
ENST00000715775.1	LINC01615-207	852	No protein	-	lncRNA	-	-
ENST00000832011.1	LINC01615-222	837	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000832010.1	LINC01615-221	810	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000832002.1	LINC01615-213	735	No protein	-	lncRNA	-	-
ENST00000831999.1	LINC01615-210	705	No protein	-	lncRNA	-	-
ENST00000564830.3	LINC01615-203	672	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000439703.1	LINC01615-201	647	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000832009.1	LINC01615-220	635	No protein	-	lncRNA	-	-
ENST00000831998.1	LINC01615-209	605	No protein	-	lncRNA	-	-
ENST00000449466.1	LINC01615-202	603	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000832000.1	LINC01615-211	579	No protein	-	lncRNA	-	-
ENST00000832015.1	LINC01615-226	571	No protein	-	lncRNA	-	-
ENST00000832005.1	LINC01615-216	530	No protein	-	lncRNA	-	-
ENST00000832013.1	LINC01615-224	451	No protein	-	lncRNA	-	-
ENST00000832008.1	LINC01615-219	412	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 672 bps,

Transcript Support Level (TSL)

TSL:1

Version

ENST00000564830.3

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000564830.3 LINC01615-203

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Transcript: ENST00000564830.3 LINC01615-203

Summary

About Us

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