Transcript: ENST00000563846.5 VPS39-DT-202

Description

VPS39 divergent transcript [Source:HGNC Symbol;Acc:HGNC:55378]

Location

Chromosome 15: 42,208,413-42,226,990 forward strand.

About this transcript

This transcript has 5 exons and maps to 61 oligo probes.

Gene

This transcript is a product of gene ENSG00000261002.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000834857.1	VPS39-DT-203	655	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000834858.1	VPS39-DT-204	835	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000563846.5	VPS39-DT-202	823	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000834859.1	VPS39-DT-205	728	No protein	-	lncRNA	-	-
ENST00000834860.1	VPS39-DT-206	660	No protein	-	lncRNA	-	-
ENST00000561800.2	VPS39-DT-201	593	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 823 bps,

Transcript Support Level (TSL)

TSL:5

Version

ENST00000563846.5

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

dotter confirmed [Definitions]

QC splicing correct

Transcript: ENST00000563846.5 VPS39-DT-202

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Transcript: ENST00000563846.5 VPS39-DT-202

Summary

About Us

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