Transcript: ENST00000557691.3 MAP3K9-DT-202

Description

MAP3K9 divergent transcript [Source:HGNC Symbol;Acc:HGNC:53189]

Gene Synonyms

LINCNMR

Location

Chromosome 14: 70,809,841-70,816,055 forward strand.

About this transcript

This transcript has 3 exons and maps to 80 oligo probes.

Gene

This transcript is a product of gene ENSG00000259153.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000697769.1	MAP3K9-DT-220	3533	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENST00000653562.4	MAP3K9-DT-203	2776	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000697757.1	MAP3K9-DT-208	2822	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000697763.1	MAP3K9-DT-214	2657	No protein	-	lncRNA	-	-
ENST00000697766.1	MAP3K9-DT-217	2256	No protein	-	lncRNA	-	-
ENST00000697767.1	MAP3K9-DT-218	2193	No protein	-	lncRNA	-	-
ENST00000697765.1	MAP3K9-DT-216	2069	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000697762.1	MAP3K9-DT-213	1757	No protein	-	lncRNA	-	-
ENST00000661317.2	MAP3K9-DT-204	1686	No protein	-	lncRNA	-	-
ENST00000697756.1	MAP3K9-DT-207	1571	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000697768.1	MAP3K9-DT-219	1565	No protein	-	lncRNA	-	-
ENST00000697776.2	MAP3K9-DT-225	1534	No protein	-	lncRNA	-	-
ENST00000697758.1	MAP3K9-DT-209	1517	No protein	-	lncRNA	-	-
ENST00000557691.3	MAP3K9-DT-202	1384	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000697774.1	MAP3K9-DT-223	1342	No protein	-	lncRNA	-	-
ENST00000697775.1	MAP3K9-DT-224	884	No protein	-	lncRNA	-	-
ENST00000697760.1	MAP3K9-DT-211	874	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000817032.1	MAP3K9-DT-227	848	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000697764.1	MAP3K9-DT-215	832	No protein	-	lncRNA	-	-
ENST00000697761.1	MAP3K9-DT-212	811	No protein	-	lncRNA	-	-
ENST00000697755.1	MAP3K9-DT-206	763	No protein	-	lncRNA	-	-
ENST00000697759.1	MAP3K9-DT-210	685	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000817031.1	MAP3K9-DT-226	677	No protein	-	lncRNA	-	-
ENST00000697772.1	MAP3K9-DT-221	653	No protein	-	lncRNA	-	-
ENST00000554032.3	MAP3K9-DT-201	552	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000685546.1	MAP3K9-DT-205	489	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000697773.1	MAP3K9-DT-222	393	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 1,384 bps,

Transcript Support Level (TSL)

TSL:2

Version

ENST00000557691.3

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000557691.3 MAP3K9-DT-202

Summary

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Transcript: ENST00000557691.3 MAP3K9-DT-202

Summary

About Us

Get help

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