Transcript: ENST00000556013.4 PTCSC3-201

Description

papillary thyroid carcinoma susceptibility candidate 3 [Source:HGNC Symbol;Acc:HGNC:43959]

Location

Chromosome 14: 36,134,890-36,176,722 reverse strand.

About this transcript

This transcript has 4 exons, is associated with 19200 variant alleles and maps to 126 oligo probes.

Gene

This transcript is a product of gene ENSG00000259104.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000556013.4	PTCSC3-201	2043	No protein	-	lncRNA	NR_049735.3	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000818562.1	PTCSC3-207	1191	No protein	-	lncRNA	-	-
ENST00000818560.1	PTCSC3-205	1163	No protein	-	lncRNA	-	-
ENST00000818561.1	PTCSC3-206	1055	No protein	-	lncRNA	-	-
ENST00000818563.1	PTCSC3-208	948	No protein	-	lncRNA	-	-
ENST00000706909.1	PTCSC3-203	889	No protein	-	lncRNA	-	-
ENST00000706910.1	PTCSC3-204	808	No protein	-	lncRNA	-	-
ENST00000706908.1	PTCSC3-202	515	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 2,043 bps,

MANE

This MANE Select transcript has no translation and matches to NR_049735.3

Transcript Support Level (TSL)

TSL:1

Version

ENST00000556013.4

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

CAGE supported TSS [Definitions]

dotter confirmed

QC splicing correct

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENST00000556013.4 PTCSC3-201

Summary

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Transcript: ENST00000556013.4 PTCSC3-201

Summary

About Us

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