Transcript: ENST00000555596.1 LINC02820-201

Description

long intergenic non-protein coding RNA 2820 [Source:HGNC Symbol;Acc:HGNC:54351]

Location

Chromosome 12: 85,318,060-85,342,912 forward strand.

About this transcript

This transcript has 3 exons and maps to 72 oligo probes.

Gene

This transcript is a product of gene ENSG00000258815.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000795857.1	LINC02820-202	699	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000795866.1	LINC02820-211	1402	No protein	-	lncRNA	-	-
ENST00000795868.1	LINC02820-213	1375	No protein	-	lncRNA	-	-
ENST00000795861.1	LINC02820-206	1344	No protein	-	lncRNA	-	-
ENST00000795859.1	LINC02820-204	1322	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000795862.1	LINC02820-207	1291	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000795867.1	LINC02820-212	1177	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000795864.1	LINC02820-209	1141	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000795879.1	LINC02820-224	1112	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000795878.1	LINC02820-223	1063	No protein	-	lncRNA	-	-
ENST00000795865.1	LINC02820-210	1039	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000795869.1	LINC02820-214	1034	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000795877.1	LINC02820-222	1014	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000795870.1	LINC02820-215	956	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000795860.1	LINC02820-205	882	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000795871.1	LINC02820-216	865	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000795872.1	LINC02820-217	837	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000795876.1	LINC02820-221	828	No protein	-	lncRNA	-	-
ENST00000795873.1	LINC02820-218	730	No protein	-	lncRNA	-	-
ENST00000795863.1	LINC02820-208	711	No protein	-	lncRNA	-	-
ENST00000795881.1	LINC02820-226	704	No protein	-	lncRNA	-	-
ENST00000795875.1	LINC02820-220	658	No protein	-	lncRNA	-	-
ENST00000795880.1	LINC02820-225	657	No protein	-	lncRNA	-	-
ENST00000795874.1	LINC02820-219	654	No protein	-	lncRNA	-	-
ENST00000795882.1	LINC02820-227	617	No protein	-	lncRNA	-	-
ENST00000795858.1	LINC02820-203	602	No protein	-	lncRNA	-	-
ENST00000795884.1	LINC02820-229	599	No protein	-	lncRNA	-	-
ENST00000795883.1	LINC02820-228	520	No protein	-	lncRNA	-	-
ENST00000555596.1	LINC02820-201	519	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000795885.1	LINC02820-230	465	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 519 bps,

Transcript Support Level (TSL)

TSL:4

Version

ENST00000555596.1

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENST00000555596.1 LINC02820-201

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENST00000555596.1 LINC02820-201

Summary

About Us

Get help

Our sister sites

Follow us