Transcript: ENST00000553559.2 SNHG10-202

Description

small nucleolar RNA host gene 10 [Source:HGNC Symbol;Acc:HGNC:27510]

Gene Synonyms

C14ORF62, FLJ40557, LINC00063, NCRNA00063, TP53LC16

Location

Chromosome 14: 95,521,937-95,534,899 reverse strand.

About this transcript

This transcript has 4 exons, is associated with 5883 variant alleles and maps to 171 oligo probes.

Gene

This transcript is a product of gene ENSG00000247092.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000663212.1	SNHG10-208	2515	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENST00000553559.2	SNHG10-202	1098	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000667310.2	SNHG10-209	3043	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000671157.3	SNHG10-211	2228	No protein	-	lncRNA	-	-
ENST00000685307.3	SNHG10-212	1992	No protein	-	lncRNA	-	-
ENST00000667668.2	SNHG10-210	1693	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000654925.1	SNHG10-205	1574	No protein	-	lncRNA	-	-
ENST00000500370.2	SNHG10-201	1531	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000820093.1	SNHG10-213	1425	No protein	-	lncRNA	-	-
ENST00000554169.4	SNHG10-203	1386	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000658932.4	SNHG10-206	1122	No protein	-	lncRNA	-	-
ENST00000820099.1	SNHG10-219	962	No protein	-	lncRNA	-	-
ENST00000820109.1	SNHG10-229	932	No protein	-	lncRNA	-	-
ENST00000555866.6	SNHG10-204	896	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000820107.1	SNHG10-227	856	No protein	-	lncRNA	-	-
ENST00000820097.1	SNHG10-217	832	No protein	-	lncRNA	-	-
ENST00000820113.1	SNHG10-233	807	No protein	-	lncRNA	-	-
ENST00000820095.1	SNHG10-215	756	No protein	-	lncRNA	-	-
ENST00000820114.1	SNHG10-234	705	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000820106.1	SNHG10-226	704	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000820100.1	SNHG10-220	596	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000820116.1	SNHG10-236	583	No protein	-	lncRNA	-	-
ENST00000820105.1	SNHG10-225	581	No protein	-	lncRNA	-	-
ENST00000660378.4	SNHG10-207	561	No protein	-	lncRNA	-	-
ENST00000820108.1	SNHG10-228	559	No protein	-	lncRNA	-	-
ENST00000820111.1	SNHG10-231	477	No protein	-	lncRNA	-	-
ENST00000820094.1	SNHG10-214	464	No protein	-	lncRNA	-	-
ENST00000820102.1	SNHG10-222	459	No protein	-	lncRNA	-	-
ENST00000820096.1	SNHG10-216	454	No protein	-	lncRNA	-	-
ENST00000820098.1	SNHG10-218	439	No protein	-	lncRNA	-	-
ENST00000820103.1	SNHG10-223	420	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000820104.1	SNHG10-224	385	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000820115.1	SNHG10-235	366	No protein	-	lncRNA	-	-
ENST00000820101.1	SNHG10-221	334	No protein	-	lncRNA	-	-
ENST00000820112.1	SNHG10-232	294	No protein	-	lncRNA	-	-
ENST00000820110.1	SNHG10-230	288	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 1,098 bps,

Transcript Support Level (TSL)

TSL:3

Version

ENST00000553559.2

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENST00000553559.2 SNHG10-202

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENST00000553559.2 SNHG10-202

Summary

About Us

Get help

Our sister sites

Follow us