Transcript: ENST00000548557.1 CASC18-202

Description

cancer susceptibility 18 [Source:HGNC Symbol;Acc:HGNC:49463]

Gene Synonyms

LOC101929110

Location

About this transcript

This transcript has 3 exons, is associated with 15953 variant alleles and maps to 194 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000548557.1	CASC18-202	2503	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000670167.1	CASC18-204	2708	No protein	-	lncRNA	-	-
ENST00000656319.1	CASC18-203	2548	No protein	-	lncRNA	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000547465.1	CASC18-201	557	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 2,503 bps,

Transcript Support Level (TSL)

TSL:1

Version

ENST00000548557.1

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.