Transcript: ENST00000548380.6 SPMIP11-202

Description

sperm microtubule inner protein 11 [Source:HGNC Symbol;Acc:HGNC:48628]

Gene Synonyms

LINC00935, TEX49

Location

Chromosome 12: 48,727,435-48,765,790 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 3 domains and features, is associated with 17478 variant alleles and maps to 240 oligo probes.

Gene

This transcript is a product of gene ENSG00000257987.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000548380.6	SPMIP11-202	577	131aa	ENSP00000489652.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS86296	A0A1B0GTD5	NM_001351123.2	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000548054.2	SPMIP11-201	635	46aa	ENSP00000490870.1	Nonsense mediated decay		A0A1B0GWC3	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 577 bps, Translation length: 131 residues

MANE

This MANE Select transcript contains ENSP00000489652 and matches to NM_001351123.2 and NP_001338052.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: A0A1B0GTD5

CCDS

This transcript is a member of the Human CCDS set: CCDS86296

Transcript Support Level (TSL)

TSL:1

Version

ENST00000548380.6

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000548380.6 SPMIP11-202

Summary

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Transcript: ENST00000548380.6 SPMIP11-202

Summary

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