Transcript: ENST00000546560.5 FOXG1-AS1-201

Description

FOXG1 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:50663]

Gene Synonyms

FOXG1-AS

Location

Chromosome 14: 28,729,510-28,765,263 reverse strand.

About this transcript

This transcript has 5 exons and maps to 152 oligo probes.

Gene

This transcript is a product of gene ENSG00000257126.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000743607.1	FOXG1-AS1-206	1408	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000654854.1	FOXG1-AS1-204	3865	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000658593.1	FOXG1-AS1-205	2023	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000743618.1	FOXG1-AS1-217	1924	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000743609.1	FOXG1-AS1-208	1703	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000743622.1	FOXG1-AS1-221	1578	No protein	-	lncRNA	-	-
ENST00000743608.1	FOXG1-AS1-207	1536	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000743611.1	FOXG1-AS1-210	1532	No protein	-	lncRNA	-	-
ENST00000743610.1	FOXG1-AS1-209	1467	No protein	-	lncRNA	-	-
ENST00000743615.1	FOXG1-AS1-214	1383	No protein	-	lncRNA	-	-
ENST00000743619.1	FOXG1-AS1-218	1133	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000743621.1	FOXG1-AS1-220	1094	No protein	-	lncRNA	-	-
ENST00000743616.1	FOXG1-AS1-215	1050	No protein	-	lncRNA	-	-
ENST00000743620.1	FOXG1-AS1-219	908	No protein	-	lncRNA	-	-
ENST00000743623.1	FOXG1-AS1-222	775	No protein	-	lncRNA	-	-
ENST00000743612.1	FOXG1-AS1-211	766	No protein	-	lncRNA	-	-
ENST00000743613.1	FOXG1-AS1-212	640	No protein	-	lncRNA	-	-
ENST00000743614.1	FOXG1-AS1-213	624	No protein	-	lncRNA	-	-
ENST00000551395.5	FOXG1-AS1-203	602	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000546560.5	FOXG1-AS1-201	538	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000549487.1	FOXG1-AS1-202	533	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000743617.1	FOXG1-AS1-216	517	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 538 bps,

Transcript Support Level (TSL)

TSL:3

Version

ENST00000546560.5

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENST00000546560.5 FOXG1-AS1-201

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Transcript: ENST00000546560.5 FOXG1-AS1-201

Summary

About Us

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