Transcript: ENST00000542064.4 LINC02747-201

Description

long intergenic non-protein coding RNA 2747 [Source:HGNC Symbol;Acc:HGNC:54266]

Gene Synonyms

AP000439.2, AP000439.3, CUPID2

Location

Chromosome 11: 69,475,604-69,479,957 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 2216 variant alleles and maps to 163 oligo probes.

Gene

This transcript is a product of gene ENSG00000255774.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000542064.4	LINC02747-201	2272	No protein	-	lncRNA	NR_184307.2	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000645449.1	LINC02747-202	2167	No protein	-	lncRNA	-	-
ENST00000717993.1	LINC02747-204	2108	No protein	-	lncRNA	-	-
ENST00000717992.1	LINC02747-203	1078	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000717994.1	LINC02747-205	1078	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000803309.1	LINC02747-207	954	No protein	-	lncRNA	-	-
ENST00000717995.1	LINC02747-206	776	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 2,272 bps,

MANE

This MANE Select transcript has no translation and matches to NR_184307.2

Transcript Support Level (TSL)

TSL:2

Version

ENST00000542064.4

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENST00000542064.4 LINC02747-201

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Transcript: ENST00000542064.4 LINC02747-201

Summary

About Us

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