Transcript: ENST00000539116.1 LINC02454-201

Description

long intergenic non-protein coding RNA 2454 [Source:HGNC Symbol;Acc:HGNC:53387]

Location

Chromosome 12: 65,602,869-65,606,503 forward strand.

About this transcript

This transcript has 2 exons and maps to 120 oligo probes.

Gene

This transcript is a product of gene ENSG00000256268.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000799822.1	LINC02454-205	578	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000541391.3	LINC02454-202	2045	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000670328.3	LINC02454-204	1926	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000799823.1	LINC02454-206	1109	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000799828.1	LINC02454-211	903	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000799829.1	LINC02454-212	867	No protein	-	lncRNA	-	-
ENST00000799830.1	LINC02454-213	703	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000799825.1	LINC02454-208	701	No protein	-	lncRNA	-	-
ENST00000799824.1	LINC02454-207	684	No protein	-	lncRNA	-	-
ENST00000799832.1	LINC02454-215	615	No protein	-	lncRNA	-	-
ENST00000657815.1	LINC02454-203	594	No protein	-	lncRNA	-	-
ENST00000539116.1	LINC02454-201	589	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000799831.1	LINC02454-214	508	No protein	-	lncRNA	-	-
ENST00000799826.1	LINC02454-209	489	No protein	-	lncRNA	-	-
ENST00000799827.1	LINC02454-210	420	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000799833.1	LINC02454-216	367	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 589 bps,

Transcript Support Level (TSL)

TSL:4

Version

ENST00000539116.1

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENST00000539116.1 LINC02454-201

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Transcript: ENST00000539116.1 LINC02454-201

Summary

About Us

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