Transcript: ENST00000535118.2 LINC00943-202

Description

long intergenic non-protein coding RNA 943 [Source:HGNC Symbol;Acc:HGNC:48639]

Location

Chromosome 12: 126,737,007-126,745,336 forward strand.

About this transcript

This transcript has 4 exons and maps to 407 oligo probes.

Gene

This transcript is a product of gene ENSG00000189238.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000658458.1	LINC00943-218	1474	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000656138.1	LINC00943-214	5253	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000654558.2	LINC00943-212	2982	No protein	-	lncRNA	-	-
ENST00000535544.1	LINC00943-203	2815	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000665976.2	LINC00943-239	2813	No protein	-	lncRNA	-	-
ENST00000809766.1	LINC00943-256	2706	No protein	-	lncRNA	-	-
ENST00000667256.1	LINC00943-242	2613	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000809764.1	LINC00943-254	2556	No protein	-	lncRNA	-	-
ENST00000809773.1	LINC00943-263	2461	No protein	-	lncRNA	-	-
ENST00000661264.2	LINC00943-226	2411	No protein	-	lncRNA	-	-
ENST00000668611.1	LINC00943-247	2360	No protein	-	lncRNA	-	-
ENST00000667490.1	LINC00943-245	2319	No protein	-	lncRNA	-	-
ENST00000809772.1	LINC00943-262	2314	No protein	-	lncRNA	-	-
ENST00000659340.1	LINC00943-220	2270	No protein	-	lncRNA	-	-
ENST00000345111.3	LINC00943-201	2126	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000653920.2	LINC00943-209	1909	No protein	-	lncRNA	-	-
ENST00000809767.1	LINC00943-257	1850	No protein	-	lncRNA	-	-
ENST00000809771.1	LINC00943-261	1831	No protein	-	lncRNA	-	-
ENST00000809768.1	LINC00943-258	1786	No protein	-	lncRNA	-	-
ENST00000809782.1	LINC00943-272	1779	No protein	-	lncRNA	-	-
ENST00000541359.2	LINC00943-207	1777	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000809775.1	LINC00943-265	1745	No protein	-	lncRNA	-	-
ENST00000809769.1	LINC00943-259	1721	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000809774.1	LINC00943-264	1708	No protein	-	lncRNA	-	-
ENST00000665993.2	LINC00943-240	1697	No protein	-	lncRNA	-	-
ENST00000537374.1	LINC00943-204	1688	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000539315.2	LINC00943-205	1667	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000809780.1	LINC00943-270	1658	No protein	-	lncRNA	-	-
ENST00000659587.1	LINC00943-222	1646	No protein	-	lncRNA	-	-
ENST00000656695.1	LINC00943-217	1632	No protein	-	lncRNA	-	-
ENST00000661679.1	LINC00943-228	1629	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000809770.1	LINC00943-260	1617	No protein	-	lncRNA	-	-
ENST00000663771.1	LINC00943-233	1578	No protein	-	lncRNA	-	-
ENST00000654173.1	LINC00943-211	1542	No protein	-	lncRNA	-	-
ENST00000809765.1	LINC00943-255	1537	No protein	-	lncRNA	-	-
ENST00000668231.1	LINC00943-246	1513	No protein	-	lncRNA	-	-
ENST00000659292.2	LINC00943-219	1507	No protein	-	lncRNA	-	-
ENST00000665641.1	LINC00943-237	1505	No protein	-	lncRNA	-	-
ENST00000670324.1	LINC00943-252	1502	No protein	-	lncRNA	-	-
ENST00000654123.1	LINC00943-210	1502	No protein	-	lncRNA	-	-
ENST00000665596.1	LINC00943-236	1451	No protein	-	lncRNA	-	-
ENST00000669542.1	LINC00943-250	1447	No protein	-	lncRNA	-	-
ENST00000669417.2	LINC00943-249	1440	No protein	-	lncRNA	-	-
ENST00000809776.1	LINC00943-266	1426	No protein	-	lncRNA	-	-
ENST00000670760.1	LINC00943-253	1419	No protein	-	lncRNA	-	-
ENST00000661435.2	LINC00943-227	1417	No protein	-	lncRNA	-	-
ENST00000535118.2	LINC00943-202	1402	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000656659.1	LINC00943-216	1375	No protein	-	lncRNA	-	-
ENST00000660082.1	LINC00943-223	1371	No protein	-	lncRNA	-	-
ENST00000665789.1	LINC00943-238	1349	No protein	-	lncRNA	-	-
ENST00000667375.2	LINC00943-244	1290	No protein	-	lncRNA	-	-
ENST00000809787.1	LINC00943-277	1282	No protein	-	lncRNA	-	-
ENST00000540250.2	LINC00943-206	1279	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000666484.1	LINC00943-241	1278	No protein	-	lncRNA	-	-
ENST00000662393.1	LINC00943-230	1263	No protein	-	lncRNA	-	-
ENST00000809785.1	LINC00943-275	1252	No protein	-	lncRNA	-	-
ENST00000809781.1	LINC00943-271	1188	No protein	-	lncRNA	-	-
ENST00000669031.1	LINC00943-248	1103	No protein	-	lncRNA	-	-
ENST00000662520.1	LINC00943-231	927	No protein	-	lncRNA	-	-
ENST00000809777.1	LINC00943-267	862	No protein	-	lncRNA	-	-
ENST00000809779.1	LINC00943-269	859	No protein	-	lncRNA	-	-
ENST00000670225.1	LINC00943-251	834	No protein	-	lncRNA	-	-
ENST00000667312.1	LINC00943-243	791	No protein	-	lncRNA	-	-
ENST00000659485.2	LINC00943-221	774	No protein	-	lncRNA	-	-
ENST00000655433.1	LINC00943-213	747	No protein	-	lncRNA	-	-
ENST00000660396.2	LINC00943-224	734	No protein	-	lncRNA	-	-
ENST00000809786.1	LINC00943-276	700	No protein	-	lncRNA	-	-
ENST00000809794.1	LINC00943-284	698	No protein	-	lncRNA	-	-
ENST00000663365.2	LINC00943-232	683	No protein	-	lncRNA	-	-
ENST00000809797.1	LINC00943-287	681	No protein	-	lncRNA	-	-
ENST00000656166.1	LINC00943-215	673	No protein	-	lncRNA	-	-
ENST00000809784.1	LINC00943-274	670	No protein	-	lncRNA	-	-
ENST00000809778.1	LINC00943-268	667	No protein	-	lncRNA	-	-
ENST00000809799.1	LINC00943-289	641	No protein	-	lncRNA	-	-
ENST00000809791.1	LINC00943-281	609	No protein	-	lncRNA	-	-
ENST00000660709.1	LINC00943-225	608	No protein	-	lncRNA	-	-
ENST00000809798.1	LINC00943-288	606	No protein	-	lncRNA	-	-
ENST00000809792.1	LINC00943-282	600	No protein	-	lncRNA	-	-
ENST00000664572.2	LINC00943-234	573	No protein	-	lncRNA	-	-
ENST00000809793.1	LINC00943-283	573	No protein	-	lncRNA	-	-
ENST00000809783.1	LINC00943-273	567	No protein	-	lncRNA	-	-
ENST00000809795.1	LINC00943-285	567	No protein	-	lncRNA	-	-
ENST00000809788.1	LINC00943-278	540	No protein	-	lncRNA	-	-
ENST00000809796.1	LINC00943-286	536	No protein	-	lncRNA	-	-
ENST00000662118.1	LINC00943-229	528	No protein	-	lncRNA	-	-
ENST00000809800.1	LINC00943-290	523	No protein	-	lncRNA	-	-
ENST00000665222.1	LINC00943-235	509	No protein	-	lncRNA	-	-
ENST00000809789.1	LINC00943-279	501	No protein	-	lncRNA	-	-
ENST00000616373.2	LINC00943-208	472	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000809790.1	LINC00943-280	409	No protein	-	lncRNA	-	-
ENST00000809801.1	LINC00943-291	389	No protein	-	lncRNA	-	-
ENST00000809802.1	LINC00943-292	298	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 1,402 bps,

Transcript Support Level (TSL)

TSL:2

Version

ENST00000535118.2

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000535118.2 LINC00943-202

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Transcript: ENST00000535118.2 LINC00943-202

Summary

About Us

Get help

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