Transcript: ENST00000532281.1 HARBI1-203

Description

harbinger transposase derived 1 [Source:HGNC Symbol;Acc:HGNC:26522]

Gene Synonyms

C11ORF77, FLJ32675

Location

Chromosome 11: 46,616,110-46,617,909 reverse strand.

About this transcript

This transcript has 2 exons, is annotated with 3 domains and features, is associated with 1185 variant alleles and maps to 57 oligo probes.

Gene

This transcript is a product of gene ENSG00000180423.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000326737.3	HARBI1-201	1967	349aa	ENSP00000317743.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7920	Q96MB7	NM_173811.4	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000529192.1	HARBI1-202	717	75aa	ENSP00000431697.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PK24	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000532281.1	HARBI1-203	620	42aa	ENSP00000436232.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PQI1	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 2, Coding exons: 1, Transcript length: 620 bps, Translation length: 42 residues

Transcript Support Level (TSL)

TSL:3

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000532281.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENST00000532281.1 HARBI1-203

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Transcript: ENST00000532281.1 HARBI1-203

Summary

About Us

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