Transcript: ENST00000531708.2 FAM111A-DT-202

Description

FAM111A divergent transcript [Source:HGNC Symbol;Acc:HGNC:53752]

Location

Chromosome 11: 59,133,977-59,143,327 reverse strand.

About this transcript

This transcript has 4 exons and maps to 366 oligo probes.

Gene

This transcript is a product of gene ENSG00000245571.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000827446.1	FAM111A-DT-206	993	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000827452.1	FAM111A-DT-212	2787	No protein	-	lncRNA	-	-
ENST00000532845.2	FAM111A-DT-203	2659	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000827448.1	FAM111A-DT-208	2531	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000827453.1	FAM111A-DT-213	2506	No protein	-	lncRNA	-	-
ENST00000531708.2	FAM111A-DT-202	2505	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000658798.2	FAM111A-DT-205	2250	No protein	-	lncRNA	-	-
ENST00000501817.6	FAM111A-DT-201	2110	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000827450.1	FAM111A-DT-210	1748	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000827456.1	FAM111A-DT-216	1744	No protein	-	lncRNA	-	-
ENST00000827454.1	FAM111A-DT-214	1733	No protein	-	lncRNA	-	-
ENST00000827457.1	FAM111A-DT-217	1301	No protein	-	lncRNA	-	-
ENST00000827464.1	FAM111A-DT-223	1249	No protein	-	lncRNA	-	-
ENST00000827455.1	FAM111A-DT-215	1237	No protein	-	lncRNA	-	-
ENST00000827447.1	FAM111A-DT-207	1158	No protein	-	lncRNA	-	-
ENST00000827451.1	FAM111A-DT-211	1131	No protein	-	lncRNA	-	-
ENST00000827449.1	FAM111A-DT-209	1112	No protein	-	lncRNA	-	-
ENST00000827459.1	FAM111A-DT-219	1064	No protein	-	lncRNA	-	-
ENST00000827463.1	FAM111A-DT-222	893	No protein	-	lncRNA	-	-
ENST00000827461.1	FAM111A-DT-221	884	No protein	-	lncRNA	-	-
ENST00000827458.1	FAM111A-DT-218	731	No protein	-	lncRNA	-	-
ENST00000827460.1	FAM111A-DT-220	546	No protein	-	lncRNA	-	-
ENST00000533220.1	FAM111A-DT-204	534	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 2,505 bps,

Transcript Support Level (TSL)

TSL:5

Version

ENST00000531708.2

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000531708.2 FAM111A-DT-202

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Transcript: ENST00000531708.2 FAM111A-DT-202

Summary

About Us

Get help

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