Transcript: ENST00000522778.1 LINC01609-202

Description

long intergenic non-protein coding RNA 1609 [Source:HGNC Symbol;Acc:HGNC:51663]

Location

Chromosome 8: 111,183,292-111,236,203 reverse strand.

About this transcript

This transcript has 2 exons and maps to 65 oligo probes.

Gene

This transcript is a product of gene ENSG00000253103.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000671497.2	LINC01609-210	596	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000655136.1	LINC01609-207	1379	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000654293.1	LINC01609-206	1063	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000663639.1	LINC01609-208	671	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000778887.1	LINC01609-213	664	No protein	-	lncRNA	-	-
ENST00000522778.1	LINC01609-202	566	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000653400.2	LINC01609-204	525	No protein	-	lncRNA	-	-
ENST00000778888.1	LINC01609-214	474	No protein	-	lncRNA	-	-
ENST00000778889.1	LINC01609-215	449	No protein	-	lncRNA	-	-
ENST00000778886.1	LINC01609-212	444	No protein	-	lncRNA	-	-
ENST00000778885.1	LINC01609-211	441	No protein	-	lncRNA	-	-
ENST00000778894.1	LINC01609-220	436	No protein	-	lncRNA	-	-
ENST00000653848.2	LINC01609-205	435	No protein	-	lncRNA	-	-
ENST00000653374.1	LINC01609-203	434	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000519506.1	LINC01609-201	424	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000669352.2	LINC01609-209	419	No protein	-	lncRNA	-	-
ENST00000778892.1	LINC01609-218	399	No protein	-	lncRNA	-	-
ENST00000778893.1	LINC01609-219	389	No protein	-	lncRNA	-	-
ENST00000778891.1	LINC01609-217	377	No protein	-	lncRNA	-	-
ENST00000778890.1	LINC01609-216	298	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 566 bps,

Transcript Support Level (TSL)

TSL:2

Version

ENST00000522778.1

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENST00000522778.1 LINC01609-202

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Transcript: ENST00000522778.1 LINC01609-202

Summary

About Us

Get help

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